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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCAGAGTACTTTGATGGATGGAAAGCTTACGACAAAGATCCTTTTCATCTTTCCCGTAACCCCCATGGGATCATCCAAATGGGTCTTGCAGAGAATCAGgtacagattatatataatccaataaatcatgttatatgttgttgtcgttgtgcatgaacttccatctattagctattatatatgaacacgtatacacatcaagctaatacctttttttcttcttttcaagtcaagttaaatacttaataacacatttttctaaacttcttacag

Basic information

species Arabidopsis thaliana
transcript AT1G01480.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G01480.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA09G39060.1 (Glycine max), 5'ss of exon 1
CTCAGAGTACTTTGATGGATGGAAAGCTTACGACAAAGATCCTTTTCATCTTTCCCGTAACCCCCATGGGATCATCCAAATGGGTCTTGCAGAGAATCAGgtacagattatatataatccaataaatcatgttatatgttgttgtcgttgtgcatgaacttccatctattagctattatatatgaacacgtatacacatcaagctaatacctttttttcttcttttcaagtcaagttaaatacttaataacacatttttctaaacttcttacag
 ||    ||||||||||||||||| || || ||   | | || || || |   |    || || || ||  ||||||| |||||||||||||| |||||||||||    ||| ||  | ||||| ||  | |||||  || | ||  || |        ||  || ||  || |  ||   |  |  |  | |    ||    ||||    ||| | |    ||| ||                                              
TTCCCCATACTTTGATGGATGGAAGGCCTATGATTCAAACCCATTCCACCCCACAAAAAATCCTCAGGGTGTCATCCAGATGGGTCTTGCAGAAAATCAGgtaca---cataaatgtttcaatatatatttttatactttatagt--ttata-------ttatatttac-agtttgtacccacaatgagatttgataatttgactaaagtatttctcttaaatttgcag---------------------------------------------

upper sequence: AT1G01480.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA18G47280.1 (Glycine max), 5'ss of exon 1
CTCAGAGTACTTTGATGGATGGAAAGCTTACGACAAAGATCCTTTTCATCTTTCCCGTAACCCCCATGGGATCATCCAAATGGGTCTTGCAGAGAATCAGgtacagattatatataatccaataaatcatgttatatgttgttgtc-gttgtgcatgaacttccatctattagctattatatatgaacacgtatacacatcaagctaatacctttttttcttcttttcaagtcaagttaaatacttaataacacatttttctaaacttcttacag
 ||    ||||||||||| ||||| || || ||   | | || ||||| |   |    || || || ||  ||||||| |||||||||||||| |||||||||||    ||| ||  | ||||| ||  | |||||  |    ||   |  |  ||  || | || |  || ||    | | ||||      |||   ||    |||| |    | | | || |||| || |    |||| |    |                            
TTCTCCTTACTTTGATGGTTGGAAGGCCTATGATTCAAACCCATTTCACCCCACAAAAAATCCTCAGGGTGTCATCCAGATGGGTCTTGCAGAAAATCAGgtaca---cataaatgttgcaatatatatttttatacttcacagtttatattatatatacgtaca-cagtttgcacccaca-atgagatttgata---atttgactaaaatgggtatgttttttttt-aatttctcttaactttgcag---------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116485524|gb|EG528116.1|EG528116
EST:     -TTCCCGTAACCCCCATGGGATCATCCAAATGGGTCTTGCAGAGAATCAG                         CTTTGCTTAGATTTGATCAAAGATTGGGTCAAAGAGAACCCAGAAGCTTCT
genomic: TTTCCCGTAACCCCCATGGGATCATCCAAATGGGTCTTGCAGAGAATCAGgtacagatta ... cttcttacagCTTTGCTTAGATTTGATCAAAGATTGGGTCAAAGAGAACCCAGAAGCTTCT
EST: gi|116448073|gb|EG490665.1|EG490665
EST:     TTTCCCGTAACCCCCATGGGATCATCCAAATGGGTCTTGCAGAGAATCAG                         CTTTGCTTAGATTTGATCAAAGATTGGGTCAAAGAGAACCCAGAAGCTTCT
genomic: TTTCCCGTAACCCCCATGGGATCATCCAAATGGGTCTTGCAGAGAATCAGgtacagatta ... cttcttacagCTTTGCTTAGATTTGATCAAAGATTGGGTCAAAGAGAACCCAGAAGCTTCT
EST: gi|116485523|gb|EG528115.1|EG528115
EST:     TTTCCCGTAACCCCCATGGGATCATCCAAATGGGTCTTGCAGAGAATCAG                         CTTTGCTTAGATTTGATCAAAGATTGGGTCAAAGAGAACCCAGAAGCTTCT
genomic: TTTCCCGTAACCCCCATGGGATCATCCAAATGGGTCTTGCAGAGAATCAGgtacagatta ... cttcttacagCTTTGCTTAGATTTGATCAAAGATTGGGTCAAAGAGAACCCAGAAGCTTCT