Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125037188|gb|EL109457.1|EL109457EST: CTGTCCAGGAAGTTGTCGAGGAGAAGCAATCCACCAATAATACCAGCCTG TTGATAACCAAAAGAGGAAGGATTGGAGTTGTA
genomic: CTGTCCAGGAAGTTGTCAAGGAGAAGCAATCCACCAATAATACCAGCCTGgtacgcttcc ... tttgaaatagTTGATAACCAAA-GAGGAAGGATTGGAGTTGTA
EST:
gi|125078654|gb|EL140961.1|EL140961EST: AATCCACCAATAATACCAGCCTG TTGATAACCAAAGAGGAAGGATTGGAGTTGTATGAAGATATGATACTA
genomic: AATCCACCAATAATACCAGCCTGgtacgcttcc ... tttgaaatagTTGATAACCAAAGAGGAAGGATTGGAGTTGTATGAAGATATGATACTA
EST:
gi|164016181|gb|ES077188.1|ES077188EST: CTGTCCAGGAAGTTGTCAAGGAGAAGCAATCCACCAATAATACCAGCCTG TTGATAACCAAAGAGGAAGGATTGGAGTTGTATGAAGATATG
genomic: CTGTCCAGGAAGTTGTCAAGGAGAAGCAATCCACCAATAATACCAGCCTGgtacgcttcc ... tttgaaatagTTGATAACCAAAGAGGAAGGATTGGAGTTGTATGAAGATATG
EST:
gi|86052450|gb|DR348207.1|DR348207EST: CTGTCCAGGAAGTTGTCAAGGAGAAGCAATCCACCAATAATACCAGCCTG TTGATAACCAAAGAGGAAGGATTGGAGTTGTATGAAGATATGATACTAGGT
genomic: CTGTCCAGGAAGTTGTCAAGGAGAAGCAATCCACCAATAATACCAGCCTGgtacgcttcc ... tttgaaatagTTGATAACCAAAGAGGAAGGATTGGAGTTGTATGAAGATATGATACTAGGT
EST:
gi|86052460|gb|DR348217.1|DR348217EST: CTGTCCAGGAAGTTGTCAAGGAGAAGCAATCCACCAATAATACCAGCCTG TTGATAACCAAAGAGGAAGGATTGGAGTTGTATGAAGATATGATACTAGGT
genomic: CTGTCCAGGAAGTTGTCAAGGAGAAGCAATCCACCAATAATACCAGCCTGgtacgcttcc ... tttgaaatagTTGATAACCAAAGAGGAAGGATTGGAGTTGTATGAAGATATGATACTAGGT
EST:
gi|124914637|gb|EH988511.1|EH988511EST: CTGTCCAGGAAGTTGTCAAGGAGAAGCAATCCACCAATAATACCAGCCTG TTGATAACCAAAGAGGAAGGATTG
genomic: CTGTCCAGGAAGTTGTCAAGGAGAAGCAATCCACCAATAATACCAGCCTGgtacgcttcc ... tttgaaatagTTGATAACCAAAGAGGAAGGATTG
EST:
gi|86052445|gb|DR348202.1|DR348202EST: TGTCCAGGAAGTTGTCAAGGGAGAAGCAATNCACCAATAATACCCNCCTG TTGATAACCCAAGAGGAAGGATTGGAGT
genomic: TGTCCAGGAAGTTGTCAAGG-AGAAGCAATCCACCAATAATACCAGCCTGgtacgcttcc ... tttgaaatagTTGATAACCAAAGAGGAAGGATTGGAGT
EST:
gi|125284736|gb|EL298821.1|EL298821EST: CTGTCCAGGAAGTTGTCAAGGAGAAGCAATCCACCAATAATACCAGCCTG TTGATAACCAAAGAGGAAGGATTGGAGTTGTA
genomic: CTGTCCAGGAAGTTGTCAAGGAGAAGCAATCCACCAATAATACCAGCCTGgtacgcttcc ... tttgaaatagTTGATAACCAAAGAGGAAGGATTGGAGTTGTA
EST:
gi|125324197|gb|EL338277.1|EL338277EST: TGTCCAAGGAAGTTGTCAAGGAGAAGCAATCCACCAATAATACCAGCCTG TTGATAACCAAAGAGGAAGGATTGGAGTT
genomic: TGTCC-AGGAAGTTGTCAAGGAGAAGCAATCCACCAATAATACCAGCCTGgtacgcttcc ... tttgaaatagTTGATAACCAAAGAGGAAGGATTGGAGTT
EST:
gi|124780625|gb|EH870568.1|EH870568EST: AAGTTGTCAAGGAGAAGCAATCCACCAATAATACCAGCCTG TTGATAACCAAAGAGGAAGGATTGGAGTTGTATGAAGATATGATACTA
genomic: AAGTTGTCAAGGAGAAGCAATCCACCAATAATACCAGCCTGgtacgcttcc ... tttgaaatagTTGATAACCAAAGAGGAAGGATTGGAGTTGTATGAAGATATGATACTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCTTCGCAGACTCAATCACTCCAACGCCACCCGTCGATCTCCCGTCGTCTCTGTCCAGGAAGTTGTCAAGGAGAAGCAATCCACCAATAATACCAGCCTGgtacgcttcctctcctcgtctccttcttttggaattttacaagttgtgagatttgttgtattgatttaagtaatttgaaatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA