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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttcattagctactaaaacttctatttctgttgatattgttaaaataatttcatttctgataactacattttttccttgtcctgctggtacctcatagCTTCGTATGAAATTTGCTGAGGAGAGATCACGATCTTCTATAATTCATGTCTCTCCTTTCAACTCCGAAAAAAAGCGCGCTGGGGTTGCAGTGGTTGCG

Basic information

species Zea mays
transcript GRMZM5G892495_T02
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G892495_T02 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os02g08010.1 (Oryza sativa), 3'ss of exon 2
gtaagttcattagctactaaaacttctatttctgttgatattgtta-aaataatttcatttctgataactacattttttccttgtcctgctggtacctc--atagCTTCGTATGAAATTTGCTGAGGAGAGATCACGATCTTCTATAATTCATGTCTCTCCTTTCAACTCCGAAAAAAAGCGCGCTGGGGTTGCAGTGGTTGCG
                          ||  | |  |   ||| | | |  |   |||  || || |  |||||||||| | || ||  |||| | ||||   ||||||| |||||||||||| ||||||| ||||  ||||||||| ||||||||||| || |||||||| ||||| || || || || ||||||||| ||| |
-------------------------gtaagtttccttgcattctcatactttgcttctcttttggtggctacatttttac-ttatctggctgatgcctcctgtagCTTCATATGAAATTTGCGGAGGAGAAATCAAAATCTTCTATTATTCATGTCTCCCCATTCAACTCAGAAAAGAAACGTGCCGGTGTTGCAGTGATTGTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aataatttcatttctgataactacattttttccttgtcctgctggtacctcatagCTTCGTATGAAATTTGCTGAGGAGAGATCACGATCTTCTATAATTCATGTCTCTCCTTTCAACTCCGAAAAAAAGCGCGCTGGGGTTGCAGTGGTTGCG
              tgataac  putative branch site (score: 2)
                ataactacatttttt  TA-rich tract