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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtcgccggttactgtttgccatcttaatttgcagcgtacccataccctgcacactgtttggatttgacaaataaataagcaacttatgcagGCGCTATCCATACCGATAATCGCCGCTTACCCCTTCATGACGCGCTTGTCGGGAATAAGGCTTGGTGTGCCTCTCTACGTCGCGGCGATGCTCAAAAGCG

Basic information

species Zea mays
transcript GRMZM5G877788_T04
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67015011|gb|CO443760.1|CO443760
EST:     GTTGGGTCAACAAGATCCTCGGCCCAGTCAACTCAACCCGAGTTTCGTCG                         GCGCTATCCATACCGATAATCGCCGCTTACCCCTTCATGACGCGCTTGTCG
genomic: GTTGGGTCAACAAGATCCTCGGCCCAGTCAACTCAACCCGAGTTTCGTCGgtgagtcgcc ... acttatgcagGCGCTATCCATACCGATAATCGCCGCTTACCCCTTCATGACGCGCTTGTCG
EST: gi|211396502|gb|FK986087.1|FK986087
EST:     CAACAAGATCCTCGGCCCAGTCAACTCAACCCGAGTTTCGTCG                         GCGCTATCCATACCGATAATCGCCGCTTACCCCTTCATGACGCGCTTGTCG
genomic: CAACAAGATCCTCGGCCCAGTCAACTCAACCCGAGTTTCGTCGgtgagtcgcc ... acttatgcagGCGCTATCCATACCGATAATCGCCGCTTACCCCTTCATGACGCGCTTGTCG
EST: gi|76926346|gb|DV170820.1|DV170820
EST:     GTTGGGTCAACAAGATCCTCGGCCCAGTCAACTCAACCCGAGTTTCGTCG                         GCGCTATCCATACCGATAATCGCCGCTTACCCCTTCATGACGCGCTTGTCG
genomic: GTTGGGTCAACAAGATCCTCGGCCCAGTCAACTCAACCCGAGTTTCGTCGgtgagtcgcc ... acttatgcagGCGCTATCCATACCGATAATCGCCGCTTACCCCTTCATGACGCGCTTGTCG
EST: gi|71427484|gb|DR808534.1|DR808534
EST:     GTTGGGTCAACAAGATCCTCGGCCCAGTCAACTCAACCCGAGTTTCGTCG                         GCGCTATCCATACCGATAATCGCCGCTTACCCCTTCATGACGCGCTTGTCG
genomic: GTTGGGTCAACAAGATCCTCGGCCCAGTCAACTCAACCCGAGTTTCGTCGgtgagtcgcc ... acttatgcagGCGCTATCCATACCGATAATCGCCGCTTACCCCTTCATGACGCGCTTGTCG
EST: gi|76018157|gb|DT945327.1|DT945327
EST:     GTTGGGTCAACAAGATCCTCGGCCCAGTCAACTCAACCCGAGTTTCGTCG                         GGGCTATCCATACCGATAATCGCCGCTTACCCCTTCATGACGCGCTTGTCG
genomic: GTTGGGTCAACAAGATCCTCGGCCCAGTCAACTCAACCCGAGTTTCGTCGgtgagtcgcc ... acttatgcagGCGCTATCCATACCGATAATCGCCGCTTACCCCTTCATGACGCGCTTGTCG
EST: gi|78084898|gb|DV513291.1|DV513291
EST:     GTTGGGTCAACAAGATCCTCGGCCCAGTCAACTCAACCCGAGTTTTGTTG                         GCGCTATCCATACCGATAATCGCCGCTTACCCCTTCATGACGCGCTTGTCG
genomic: GTTGGGTCAACAAGATCCTCGGCCCAGTCAACTCAACCCGAGTTTCGTCGgtgagtcgcc ... acttatgcagGCGCTATCCATACCGATAATCGCCGCTTACCCCTTCATGACGCGCTTGTCG
EST: gi|78123316|gb|DV541700.1|DV541700
EST:     GTTGGGTCAACAAGATCCTCGGCCCAGTCAACTCAACCCGAGTTTCGTCG                         GCGCTATCCATACCGATAATCGCCGCTTACCCCTTCATGACGCGCTTGTCG
genomic: GTTGGGTCAACAAGATCCTCGGCCCAGTCAACTCAACCCGAGTTTCGTCGgtgagtcgcc ... acttatgcagGCGCTATCCATACCGATAATCGCCGCTTACCCCTTCATGACGCGCTTGTCG
EST: gi|149077505|gb|EE166202.2|EE166202
EST:     GTTGGGTCAACAAGATCCTCGGCCCAGTCAACTCAACCCGAGTTTCGTCG                         GCGCTATCCATACCGATAATCGCCGCTTACCCCTTCATGACGCGCTTGTCG
genomic: GTTGGGTCAACAAGATCCTCGGCCCAGTCAACTCAACCCGAGTTTCGTCGgtgagtcgcc ... acttatgcagGCGCTATCCATACCGATAATCGCCGCTTACCCCTTCATGACGCGCTTGTCG
EST: gi|94474394|gb|EB703352.1|EB703352
EST:     GTTGGGTCAACAAGATCCTCGGCCCAGTCAACTCAACCCGAGTTTCGTCG                         GCGCTATCCATACCGATAATCGCCGCTTACCCCTTCATGACGCGCTTGTCG
genomic: GTTGGGTCAACAAGATCCTCGGCCCAGTCAACTCAACCCGAGTTTCGTCGgtgagtcgcc ... acttatgcagGCGCTATCCATACCGATAATCGCCGCTTACCCCTTCATGACGCGCTTGTCG
EST: gi|71428520|gb|DR809570.1|DR809570
EST:     GTTGGGTCAACAAGATCCTCGGCCCAGTCAACTCAACCCGAGTTTCGTCG                         GCGCTATCCATACCGATAATCGCCGCTTACCCCTTCATGACGCGCTTGTCG
genomic: GTTGGGTCAACAAGATCCTCGGCCCAGTCAACTCAACCCGAGTTTCGTCGgtgagtcgcc ... acttatgcagGCGCTATCCATACCGATAATCGCCGCTTACCCCTTCATGACGCGCTTGTCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacccataccctgcacactgtttggatttgacaaataaataagcaacttatgcagGCGCTATCCATACCGATAATCGCCGCTTACCCCTTCATGACGCGCTTGTCGGGAATAAGGCTTGGTGTGCCTCTCTACGTCGCGGCGATGCTCAAAAGCG
                         atttgac  putative branch site (score: 4)
                         atttgacaaataaata  TA-rich tract