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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcccatgcatctcgaatatttggcgacaaatagaatagaaaagcttatgtaattggattttcttcactgcagTCACGGAAGATGCAGGACAATGGTTGGAAACCAAGATGGTTCCGAAGGGATGATGACACATTCCGCTATGTGGGAGGTTACTGGGAGGCACGACAGCAGC

Basic information

species Zea mays
transcript GRMZM5G875564_T01
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60338569|gb|DN205542.1|DN205542
EST:     ATAGTAAGGCCAATGCTGAGAAGCTGCGACTGGAGAGGAGGCAACGGATG                         TCACGGAAGATGCAGGACAATGGTTGGAA
genomic: ATAGTAAGGCCAATGCTGAGAAGCTGCGACTGGAGAGGAGGCAACGGATGgtatgcccat ... ttcactgcagTCACGGAAGATGCAGGACAATGGTTGGAA
EST: gi|211125948|gb|FL448868.1|FL448868
EST:     ATAGTAAGGCCAATGCTGAGAAGCTGCGACTGGAGAGGAGGCAACGGATG                         TCACGGAAGATGCAGGACAATGGTTGGAAACCAAGATGGTTCCGAAGGGAT
genomic: ATAGTAAGGCCAATGCTGAGAAGCTGCGACTGGAGAGGAGGCAACGGATGgtatgcccat ... ttcactgcagTCACGGAAGATGCAGGACAATGGTTGGAAACCAAGATGGTTCCGAAGGGAT
EST: gi|211125947|gb|FL448867.1|FL448867
EST:     ATAGTAAGGCCAATGCTGAGAAGCTGCGACTGGAGAGGAGGCAACGGATG                         TCACGGAAGATGCAGGACAATGGTTGGAAACCAAGATGGTTCCGAAGGGAT
genomic: ATAGTAAGGCCAATGCTGAGAAGCTGCGACTGGAGAGGAGGCAACGGATGgtatgcccat ... ttcactgcagTCACGGAAGATGCAGGACAATGGTTGGAAACCAAGATGGTTCCGAAGGGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttggcgacaaatagaatagaaaagcttatgtaattggattttcttcactgcagTCACGGAAGATGCAGGACAATGGTTGGAAACCAAGATGGTTCCGAAGGGATGATGACACATTCCGCTATGTGGGAGGTTACTGGGAGGCACGACAGCAGC
                                        ttttcttcact  CT-rich tract
          aaatagaatagaaaa  TA-rich tract