1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
gtaagacctatatatgttatcaatgtcttagcatgaactgtagaaaattcagtcataaaatgttcctagtgttattactgttgttgtatgagtcgattctgatttctcattgtactccatacattctgctgtattttgtcataatcttctcgtttcattatattttctgaggatagATGTCAGAAACCCGATTTTGGGAAAAATACTGTAGAGCTGAGTATCTAGTCAGGACAAAAAACACTGCAGCAGCAACAGCTGAGGCAGCTGGAGATGAGG
species | Zea mays |
transcript | GRMZM5G870572_T03 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CAGAAAAGCCTGCTGTCCGTAGAGCATATTTAGATTTTGTTCCAAAAAAG ATGTCAGAAACCCGATTTTGGGAAAAATACTGTAGAGCTGAGTATCTAGTCEST: gi|148959670|gb|EC905590.2|EC905590
genomic: CAGAAAAGCCTGCTGTCCGTAGAGCATATTTAGATTTTGTTCCAAAAAAGgtaagaccta ... ctgaggatagATGTCAGAAACCCGATTTTGGGAAAAATACTGTAGAGCTGAGTATCTAGTC
EST: CAGAAAAGCCTGCTGTCCGTAGAGCATATTTAGATTTTGTTCCAAAAAAG ATGTCAGAAACCCGATTTEST: gi|211184532|gb|FL153187.1|FL153187
genomic: CAGAAAAGCCTGCTGTCCGTAGAGCATATTTAGATTTTGTTCCAAAAAAGgtaagaccta ... ctgaggatagATGTCAGAAACCCGATTT
EST: CAGAAAAGCCTGCTGTCCGTAGAGCATATTTAGATTTTGTTCCAAAAAAG ATGTCAGAAACCCGATTTTGGGAAAAATACTGTAGAGCTGAGTATCTAGTCEST: gi|31356392|gb|CD440749.1|CD440749
genomic: CAGAAAAGCCTGCTGTCCGTAGAGCATATTTAGATTTTGTTCCAAAAAAGgtaagaccta ... ctgaggatagATGTCAGAAACCCGATTTTGGGAAAAATACTGTAGAGCTGAGTATCTAGTC
EST: CAGAAAAGCCTGCTGTCCGTAGAGCATATTTAGATTTTGTTCCAAAAAAG ATGTCAGAAACCCGATTTTGGGAAAAATACTGTAGAGCTGAGTATCTAGTCEST: gi|13150541|gb|BG320863.1|BG320863
genomic: CAGAAAAGCCTGCTGTCCGTAGAGCATATTTAGATTTTGTTCCAAAAAAGgtaagaccta ... ctgaggatagATGTCAGAAACCCGATTTTGGGAAAAATACTGTAGAGCTGAGTATCTAGTC
EST: CAGAAAAGCCTGCTGTCCGTAGAGSATATTTAGATTTTGTTCCAAAAAAG ATGTCAGAAACCCGATTTTGGGAAAAATACTGTAGAGCTGAGTATCTAGTC
genomic: CAGAAAAGCCTGCTGTCCGTAGAGCATATTTAGATTTTGTTCCAAAAAAGgtaagaccta ... ctgaggatagATGTCAGAAACCCGATTTTGGGAAAAATACTGTAGAGCTGAGTATCTAGTC
cattctgctgtattttgtcataatcttctcgtttcattatattttctgaggatagATGTCAGAAACCCGATTTTGGGAAAAATACTGTAGAGCTGAGTATCTAGTCAGGACAAAAAACACTGCAGCAGCAACAGCTGAGGCAGCTGGAGATGAGG
tattttct CT-rich tract
tttcattatattttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagacctatatatgttatcaatgtcttagcatgaactgtagaaaattcagtcataaaatgttcctagtgttattactgttgttgtatgagtcgattctgatttctcattgtactccatacattctgctgtattttgtcataatcttctcgtttcattatattttctgaggatagATGTCAGAAACCCGATTTTGGGAAAAATACTGTAGAGCTGAGTATCTAGTCAGGACAAAAAACACTGCAGCAGCAACAGCTGAGGCAGCTGGAGATGAGG
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