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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgcaacccacttgtagttgcttagtttaaaacatcctaaatagttactaattggttctgcatcttggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA

Basic information

species Zea mays
transcript GRMZM5G850355_T08
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G850355_T02 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os02g42320.1 (Oryza sativa), 3'ss of exon 8
----gtattgcaacccacttgtagttgcttagtttaaaacatcctaaat-agttactaattggttctgcatcttggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA
    || ||| |     ||| | ||| ||   |    |||||||| | | ||||||| | || ||| |       |  ||||||||||||||| ||||| ||  ||||||| |||||||| ||| |||||||| |||||||||| |||||
gtatgtcttgtaggt-gcttct-gtttctatttccggaacatccttactgagttactgactgattcgg-------gggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAA

upper sequence: GRMZM5G850355_T02 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os02g42320.4 (Oryza sativa), 3'ss of exon 8
----gtattgcaacccacttgtagttgcttagtttaaaacatcctaaat-agttactaattggttctgcatcttggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA----------------------------------
    || ||| |     ||| | ||| ||   |    |||||||| | | ||||||| | || ||| |       |  ||||||||||||||| ||||| ||  ||||||| |||||||| ||| |||||||| |||||||||| |||||                                  
gtatgtcttgtaggt-gcttct-gtttctatttccggaacatccttactgagttactgactgattcgg-------gggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATCTGACCGTGAATTCAAGTATGTCATACAGACTTGATCAAGCTGTTTTTTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|56382484|gb|CV985153.1|CV985153
EST:     ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGGAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|32942863|gb|CF047682.1|CF047682
EST:     ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|60354522|gb|DN221495.1|DN221495
EST:     ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|32931156|gb|CF035968.1|CF035968
EST:     ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATT
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATT
EST: gi|71331106|gb|DR802380.1|DR802380
EST:     ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|5525504|gb|AI861397.1|AI861397
EST:     ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|32932932|gb|CF037744.1|CF037744
EST:     ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|211246869|gb|FL472890.1|FL472890
EST:     ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|67025317|gb|CO454066.1|CO454066
EST:     ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCCAACA-CATTGAAATCGGAATTATTCGAG
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCC-AACAACATTGAAATCGGAATTATTCGAG
EST: gi|213174021|gb|FM192687.1|FM192687
EST:     TGGAACTTGATGATGCCANNNCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: TGGAGCTTGATGATGCCA-TCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|32908068|gb|CF012881.1|CF012881
EST:     ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|6653876|gb|AW267281.1|AW267281
EST:     ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|32931645|gb|CF036457.1|CF036457
EST:     ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|5895580|gb|AW036826.1|AW036826
EST:     ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|113702959|gb|EE680463.1|EE680463
EST:     ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|5108080|gb|AI739793.1|AI739793
EST:     ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|14204267|gb|BG837944.1|BG837944
EST:     ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|78021721|gb|DV490108.1|DV490108
EST:     ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|211302508|gb|FL360538.1|FL360538
EST:     ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATWTGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|71331110|gb|DR802381.1|DR802381
EST:     ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|211253078|gb|FL452731.1|FL452731
EST:     ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|33093559|gb|CF053553.1|CF053553
EST:     ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|32868632|gb|CF008314.1|CF008314
EST:     ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|32865823|gb|CF005505.1|CF005505
EST:     ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|14242859|gb|BG840665.2|BG840665
EST:     ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAG-                         ATATGAGGGGC
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGC
EST: gi|32930042|gb|CF034854.1|CF034854
EST:     ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|67023284|gb|CO452033.1|CO452033
EST:     TGGAGCTTGATGATGCCATCCACACTGNCA-TTTTGACTTTGAAAGAAG-                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: TGGAGCTTGATGATGCCATCCACACTG-CAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|60359187|gb|DN226160.1|DN226160
EST:     ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|32849719|gb|CD989400.1|CD989400
EST:     ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|9953259|gb|BE639842.1|BE639842
EST:     GGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: GGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|16918711|gb|BM073864.1|BM073864
EST:     ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|6031332|gb|AW076189.1|AW076189
EST:     ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|6020496|gb|AW065424.1|AW065424
EST:     ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|40337252|gb|CK371322.1|CK371322
EST:     ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|67018206|gb|CO446955.1|CO446955
EST:     ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|60341905|gb|DN208878.1|DN208878
EST:     ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|14203539|gb|BG837216.1|BG837216
EST:     ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|6020544|gb|AW065472.1|AW065472
EST:     ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|14243343|gb|BG841010.2|BG841010
EST:     ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|5762225|gb|AI967273.1|AI967273
EST:     ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|211227292|gb|FL365228.1|FL365228
EST:     GGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAAGAAG-                         ATATGAGGGGGCAAATTTCC
genomic: GG-AGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAA-GAAGGgtattgcaac ... ggacttgcagATATGAGGGG-CAAATTTCC
EST: gi|60346286|gb|DN213259.1|DN213259
EST:     ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|4572854|gb|AI586503.1|AI586503
EST:     ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|5819357|gb|AI987563.1|AI987563
EST:     ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|12967997|gb|BG264944.1|BG264944
EST:     ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|211062081|gb|FL465317.1|FL465317
EST:     ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|60355411|gb|DN222384.1|DN222384
EST:     ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|31355634|gb|CD439991.1|CD439991
EST:     ATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|211062082|gb|FL465318.1|FL465318
EST:     ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|67010331|gb|CO439080.1|CO439080
EST:     ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACCTTGAAAGA-GG                         ATTTGAGGGGCAAA
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAA
EST: gi|87156656|gb|DY401445.1|DY401445
EST:     ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: gi|166584388|gb|EG277521.1|EG277521
EST:     ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG                         ATATGAGGG-CAAATTTCCTCCAACAACA
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaac ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttagtttaaaacatcctaaatagttactaattggttctgcatcttggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA
                        tactaat  putative branch site (score: 1)
                taaatagttactaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtattgcaacccacttgtagttgcttagtttaaaacatcctaaatagttactaattggttctgcatcttggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA