1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtaagctagggcattcttcagaaatttgctgatcccttttggtattatttttaaaaaaatgaagttgcacaagcatactcaacttttcagGAGGGCAGTCAGGAAACACTTGCTACAATGTTAGGGATGGGGTTGGGGATGCTGTTAGCTCAAATTACCAGAGGGCATGCTTTGAGTGTATGGGCATCTT
species | Zea mays |
transcript | GRMZM5G846548_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TAACGCAGCATTTTGCACTTGCAAATAATGCAGCTGATATTTCTGCAAAG GAGGGCAGTCAGGAAACACTTGCTACAATGTTAGGGATGGGGTTGGGGATGEST: gi|18654522|gb|BM499327.1|BM499327
genomic: TAACGCAGCATTTTGCACTTGCAAATAATGCAGCTGATATTTCTGCAAAGgtaagctagg ... aacttttcagGAGGGCAGTCAGGAAACACTTGCTACAATGTTAGGGATGGGGTTGGGGATG
EST: TAACGCAGCATTTTGCACTTGCAAATAATGCAGCTGATATTTCTGCAAAG GAGGGCAGTCAGGAAACACTTGCTACAATGTTAGGGATGGGGTTGGGGATGEST: gi|18649151|gb|BM497970.1|BM497970
genomic: TAACGCAGCATTTTGCACTTGCAAATAATGCAGCTGATATTTCTGCAAAGgtaagctagg ... aacttttcagGAGGGCAGTCAGGAAACACTTGCTACAATGTTAGGGATGGGGTTGGGGATG
EST: TAACGCAGCATTTTGCACTTGCAAATAATGCAGCTGATATTTCTGCAAAG GAGGGCAGTCAGGAAACACTTGCTACAATGTTAGGGATGGGGTTGGGGATGEST: gi|88755251|gb|DY539392.1|DY539392
genomic: TAACGCAGCATTTTGCACTTGCAAATAATGCAGCTGATATTTCTGCAAAGgtaagctagg ... aacttttcagGAGGGCAGTCAGGAAACACTTGCTACAATGTTAGGGATGGGGTTGGGGATG
EST: TAACGCAGCATTTTGCACTTGCAAATAATGCAGCTGATATTTCTGCCAAG GAAGGCAGTCAGGAAACACTTGCTACAATGTTAGGGATGGGGGTGGGGEST: gi|18648891|gb|BM497710.1|BM497710
genomic: TAACGCAGCATTTTGCACTTGCAAATAATGCAGCTGATATTTCTGCAAAGgtaagctagg ... aacttttcagGAGGGCAGTCAGGAAACACTTGCTACAATGTTAGGGATGGGGTTGGGG
EST: TAACGCAGCATTTTGCACTTGCAAATAATGCAGCTGATATTTCTGCAAAG GAGGGCAGTCAGGAAACACTTGCTACAATGTTAGGGATGGGGTTGGGGATGEST: gi|211102153|gb|FL034739.1|FL034739
genomic: TAACGCAGCATTTTGCACTTGCAAATAATGCAGCTGATATTTCTGCAAAGgtaagctagg ... aacttttcagGAGGGCAGTCAGGAAACACTTGCTACAATGTTAGGGATGGGGTTGGGGATG
EST: ATTTCTGCAAAG GAGGGCAGTCAGGAAACACTTGCTACAATGTTAGGGATGGGGTTGGGGATG
genomic: ATTTCTGCAAAGgtaagctagg ... aacttttcagGAGGGCAGTCAGGAAACACTTGCTACAATGTTAGGGATGGGGTTGGGGATG
cttttggtattatttttaaaaaaatgaagttgcacaagcatactcaacttttcagGAGGGCAGTCAGGAAACACTTGCTACAATGTTAGGGATGGGGTTGGGGATGCTGTTAGCTCAAATTACCAGAGGGCATGCTTTGAGTGTATGGGCATCTT
cttttc CT-rich tract
tattatttttaaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctagggcattcttcagaaatttgctgatcccttttggtattatttttaaaaaaatgaagttgcacaagcatactcaacttttcagGAGGGCAGTCAGGAAACACTTGCTACAATGTTAGGGATGGGGTTGGGGATGCTGTTAGCTCAAATTACCAGAGGGCATGCTTTGAGTGTATGGGCATCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA