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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgagcaaggacgcatgattaggtccaaacccggctgaaagcacgatgctcctactgtactgattgtatgcctccacacacacaggcatgctaatttcagcttcggcccttttaatgcagTGGCTACGGACGCTGCTTTACCCCAGGATCAAAAGCAAGGTGAGCAAAGCGGGGCATGAGTGGCGGGCCTTTGCCGTTGCGCAACCGGAGCCTCTTTTAC

Basic information

species Zea mays
transcript GRMZM5G843914_T03
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G843914_T03 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os03g55890.1 (Oryza sativa), 3'ss of exon 10
gtatgagcaaggacgcatgattaggtccaaacccggctgaaagcacgatgctcctactgtactgattgtatgcctccacacacacaggcatgctaatttca-gcttcggcccttttaatgcagTGGCTACGGACGCTGCTTTACCCCAGGATCAAAAGCAAGGTGAGCAAAGCGGGGCATGAGTGGCGGGCCTTTGCCGTTGCGCAACCGGAGCCTCTTTTAC
|||  |||||  | | || |||||||| ||||   | | ||||    ||  ||  |||||||||||| |||             || |||||||||||  | |  | |  |||||||||||||||| |||| ||  ||||| |||| |||||||||||||| ||| ||||||  ||||||| |||||  |||||||||||||| ||| | |||||||||||||
gta-aagcaaacatg-attattaggtcaaaact-agttaaaagtgtaatattcacactgtactgattatata-----------gcaagcatgctaattctatgtgttgttccttttaatgcagTGGTTACGTACTTTGCTTCACCCAAGGATCAAAAGCAAAGTGGGCAAAGTAGGGCATGTGTGGCAAGCCTTTGCCGTTGCACAATCAGAGCCTCTTTTAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71431420|gb|DR812470.1|DR812470
EST:     CCGTCATCCAGAGCATTGTTCTTGGGTGCAACACACACTGCCCCGGACAG                         TGGCTACGGACGCTGCTTTACCCCAGGATCAAAAGCAAGGTGAGCAAAGCG
genomic: CCGTCATCCAGAGCATTGTTCTTGGGTGCAACACACACTGCCCCGGACAGgtatgagcaa ... tttaatgcagTGGCTACGGACGCTGCTTTACCCCAGGATCAAAAGCAAGGTGAGCAAAGCG
EST: gi|74241581|gb|DT649495.1|DT649495
EST:     CCGTCATCCAGAGCATTGTTCTTGGGTGCAACACACACTGCCCCGGACAG                         TGGCTACGGACGCTGCTTTACCCCAGGATCAAAAGCAAGGTGAGCAAAGCG
genomic: CCGTCATCCAGAGCATTGTTCTTGGGTGCAACACACACTGCCCCGGACAGgtatgagcaa ... tttaatgcagTGGCTACGGACGCTGCTTTACCCCAGGATCAAAAGCAAGGTGAGCAAAGCG
EST: gi|71431421|gb|DR812471.1|DR812471
EST:     CCGTCATCCAGAGCATTGTTCTTGGGTGCAACACACACTGCCCCGGACAG                         TGGCTACGGACGCTGCTTTACCCCAGGATCAAAAGCAAGGTGAGCAAAGCG
genomic: CCGTCATCCAGAGCATTGTTCTTGGGTGCAACACACACTGCCCCGGACAGgtatgagcaa ... tttaatgcagTGGCTACGGACGCTGCTTTACCCCAGGATCAAAAGCAAGGTGAGCAAAGCG
EST: gi|88756881|gb|DY541022.1|DY541022
EST:     CCGTCATCCAGAGCATTGTTCTTGGGTGCAACACACACTGCCCCGGACAG                         TGGCTACGGACGCTGCTTTACCCCAGGATCAAAAGCAAGGTGAGCAAAGCG
genomic: CCGTCATCCAGAGCATTGTTCTTGGGTGCAACACACACTGCCCCGGACAGgtatgagcaa ... tttaatgcagTGGCTACGGACGCTGCTTTACCCCAGGATCAAAAGCAAGGTGAGCAAAGCG
EST: gi|89760782|gb|DY689054.1|DY689054
EST:     CCGTCATCCAGAGCATTGTTCTTGGGTGCAACACACACTGCCCCGGACAG                         TGGCTACGGACGCTGCTTTACCCCAGGATCAAAAGCAAGGTGAGCAAAGCG
genomic: CCGTCATCCAGAGCATTGTTCTTGGGTGCAACACACACTGCCCCGGACAGgtatgagcaa ... tttaatgcagTGGCTACGGACGCTGCTTTACCCCAGGATCAAAAGCAAGGTGAGCAAAGCG
EST: gi|78123668|gb|DV542052.1|DV542052
EST:     CCGTCATCCAGAGCATTGTTCTTGGGTGCAACACACACTGCCCCGGACAG                         TGGCTACGGACGCTGCTTTACCCCAGGATCAAAAGCAAGGTGAGCAAAGCG
genomic: CCGTCATCCAGAGCATTGTTCTTGGGTGCAACACACACTGCCCCGGACAGgtatgagcaa ... tttaatgcagTGGCTACGGACGCTGCTTTACCCCAGGATCAAAAGCAAGGTGAGCAAAGCG
EST: gi|60357556|gb|DN224529.1|DN224529
EST:     CCGTCATCCAGAGCATTGTTCTTGGGTGCAACACACACTGCCCCGGACAG                         TGGCTACGGACGCTGCTTTACCCCAGGATCAAAAGCAAGGTGAGCAAAGCG
genomic: CCGTCATCCAGAGCATTGTTCTTGGGTGCAACACACACTGCCCCGGACAGgtatgagcaa ... tttaatgcagTGGCTACGGACGCTGCTTTACCCCAGGATCAAAAGCAAGGTGAGCAAAGCG
EST: gi|101391015|gb|EB817443.1|EB817443
EST:     CGTCATCCAGAGCATTGTTCTTGGGTGCAACACACACTGCCCCCGGACAG                         TGGCTACGGACGCTGCTTTACCCCAGGATCAAAAGCAAGGTGAGCAAAGCG
genomic: CGTCATCCAGAGCATTGTTCTTGGGTGCAACACACACTGCCCC-GGACAGgtatgagcaa ... tttaatgcagTGGCTACGGACGCTGCTTTACCCCAGGATCAAAAGCAAGGTGAGCAAAGCG
EST: gi|211041651|gb|FL024100.1|FL024100
EST:     CCGTCATCCAGAGCATTGTTCTTGGATGCAACACACACTGCCCCGGACAG                         TGGCTACGGACGCTGCTTTACCCCAGGATCAAAAGCAAGGTGAGCAAAGCG
genomic: CCGTCATCCAGAGCATTGTTCTTGGGTGCAACACACACTGCCCCGGACAGgtatgagcaa ... tttaatgcagTGGCTACGGACGCTGCTTTACCCCAGGATCAAAAGCAAGGTGAGCAAAGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatgcctccacacacacaggcatgctaatttcagcttcggcccttttaatgcagTGGCTACGGACGCTGCTTTACCCCAGGATCAAAAGCAAGGTGAGCAAAGCGGGGCATGAGTGGCGGGCCTTTGCCGTTGCGCAACCGGAGCCTCTTTTAC
                                         ccctttt  CT-rich tract
                                            ttttaat  TA-rich tract