1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtatgtctcaagtatcaattttactaatatgtgacttttttttatttatctactagtagctaatagcagccatttgcagTAAATTAACTCGTATTCTTAAGGATGGGCTCTCTGGCAATTCTCGAACCGTTATGGTTGCTACAATATCACCAGCTGATGATCAGTATCATCACACAACG
species | Zea mays |
transcript | GRMZM5G837018_T02 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTAGGCAAGCAAAATAAGAAAGGTCTTGCCTATGTTCCCTATCGCAACAG TAAATTAACTCGTATTCTTAAGGATGGGCTCTCTGGCAATTCTCGAACCGTEST: gi|87152314|gb|DY397103.1|DY397103
genomic: CTAGGCAAGCAAAATAAGAAAGGTCTTGCCTATGTTCCCTATCGCAACAGgtatgtctca ... ccatttgcagTAAATTAACTCGTATTCTTAAGGATGGGCTCTCTGGCAATTCTCGAACCGT
EST: CTAGGCAAGCAAAATAAGAAAGGTCTTGCCTATGTTCCCTATCGCAACAG TAAATTAACTCGTATTCTTAAGGATGGGCTCTCTGGCAATTCEST: gi|19057866|gb|BM736533.1|BM736533
genomic: CTAGGCAAGCAAAATAAGAAAGGTCTTGCCTATGTTCCCTATCGCAACAGgtatgtctca ... ccatttgcagTAAATTAACTCGTATTCTTAAGGATGGGCTCTCTGGCAATTC
EST: CTAGGCAAGCAAAATAAGAAAGGTCTTGCCTATGTTCCCTATCGCAACAG TAAATTAACTCGTATTCTTAAGGAT
genomic: CTAGGCAAGCAAAATAAGAAAGGTCTTGCCTATGTTCCCTATCGCAACAGgtatgtctca ... ccatttgcagTAAATTAACTCGTATTCTTAAGGAT
taatatgtgacttttttttatttatctactagtagctaatagcagccatttgcagTAAATTAACTCGTATTCTTAAGGATGGGCTCTCTGGCAATTCTCGAACCGTTATGGTTGCTACAATATCACCAGCTGATGATCAGTATCATCACACAACG
ttttttttatttatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtctcaagtatcaattttactaatatgtgacttttttttatttatctactagtagctaatagcagccatttgcagTAAATTAACTCGTATTCTTAAGGATGGGCTCTCTGGCAATTCTCGAACCGTTATGGTTGCTACAATATCACCAGCTGATGATCAGTATCATCACACAACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT