1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgtaattttttctacattttttataatgttctaaaaaaactgttgctaccggtttactaactgcctttttggatattttatctttcagGTATTCAACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTG
species | Zea mays |
transcript | GRMZM5G835235_T03 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCTCACCCATGGCACAAG GTATTCAACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTAEST: gi|8516392|gb|BE123118.1|BE123118
genomic: ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCTCACCCATGGCACAAGgtgtaatttt ... tatctttcagGTATTCAACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
EST: TTCCCCCAAATCAAAGCTCACCCATGGCACAAG GTATTCAACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTAEST: gi|8516272|gb|BE122999.1|BE122999
genomic: TTCCCACAAATCAAAGCTCACCCATGGCACAAGgtgtaatttt ... tatctttcagGTATTCAACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
EST: ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCTCACCCATGGCACAAG GTATTCAACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTAEST: gi|32865481|gb|CF005163.1|CF005163
genomic: ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCTCACCCATGGCACAAGgtgtaatttt ... tatctttcagGTATTCAACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
EST: ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCTCACCCATGGCACAAG GTATTCAACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTAEST: gi|33093876|gb|CF053870.1|CF053870
genomic: ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCTCACCCATGGCACAAGgtgtaatttt ... tatctttcagGTATTCAACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
EST: ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCTCACCCATGGCACAAG GTATTCAACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTAEST: gi|20803001|gb|BQ294051.1|BQ294051
genomic: ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCTCACCCATGGCACAAGgtgtaatttt ... tatctttcagGTATTCAACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
EST: ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCTCACCCATGGCACAAG GTATTCAACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTAEST: gi|32865499|gb|CF005181.1|CF005181
genomic: ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCTCACCCATGGCACAAGgtgtaatttt ... tatctttcagGTATTCAACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
EST: ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCTCACCCATGGCACAAG GTATTCAACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
genomic: ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCTCACCCATGGCACAAGgtgtaatttt ... tatctttcagGTATTCAACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
aaaaaactgttgctaccggtttactaactgcctttttggatattttatctttcagGTATTCAACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTG
tactaac putative branch site (score: 86)
ttttatctttc putative PPT
tttttggatattttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtaattttttctacattttttataatgttctaaaaaaactgttgctaccggtttactaactgcctttttggatattttatctttcagGTATTCAACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG