1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaagtgaatgtcatgttgtacattacatgacagaaatacacatcattagccctgtgcgccagttcttgcattacccctgtcgacttcatggttttctaacatttttatgaatctttttgtccagGTGGAGGCGCTTGTCCACCCATTCTTTGACGAGCTTCGAGATCCTAATACTCGTCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTC
species | Zea mays |
transcript | GRMZM5G835235_T02 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT GTGGAGGCGCTTGTCCACCCATTCTTTGACGAGCTTCGAGATCCTAATACTEST: gi|33092593|gb|CF052587.1|CF052587
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgaat ... ttttgtccagGTGGAGGCGCTTGTCCACCCATTCTTTGACGAGCTTCGAGATCCTAATACT
EST: GTACTCCCCAAATCTGAGATGCACTGCT GTGGAGGCGCTTGTCCACCCATTCTTTGACGAGCTTCGAGATCCTAATACTEST: gi|30087357|gb|CB885563.1|CB885563
genomic: GTACTCCCCAAATCTGAGATGCACTGCTgtaagtgaat ... ttttgtccagGTGGAGGCGCTTGTCCACCCATTCTTTGACGAGCTTCGAGATCCTAATACT
EST: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT GTGGAGGCGCTTGTCCACCCATTCTTTGACGAGCTTCGAGATCCTAATACTEST: gi|32865480|gb|CF005162.1|CF005162
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgaat ... ttttgtccagGTGGAGGCGCTTGTCCACCCATTCTTTGACGAGCTTCGAGATCCTAATACT
EST: AGATGCACTGCT GTGGAGGCGCTTGTCCACCCATTCTTTGACGAGCTTCGAGATCCTAATACTEST: gi|60395660|gb|DN228530.1|DN228530
genomic: AGATGCACTGCTgtaagtgaat ... ttttgtccagGTGGAGGCGCTTGTCCACCCATTCTTTGACGAGCTTCGAGATCCTAATACT
EST: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT GTGGAGGCGCTTGTCCACCCATTCTTTGACGAGCTTCGAGATCCTAATACTEST: gi|18172726|gb|BM348114.1|BM348114
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgaat ... ttttgtccagGTGGAGGCGCTTGTCCACCCATTCTTTGACGAGCTTCGAGATCCTAATACT
EST: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT GTGGAGGCGCTTGTCCACCCATTCTTTGACGAGCTTCGAGATCCTAATACTEST: gi|32928745|gb|CF033557.1|CF033557
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgaat ... ttttgtccagGTGGAGGCGCTTGTCCACCCATTCTTTGACGAGCTTCGAGATCCTAATACT
EST: ACTCCCCAAATCTGAGATGCACTGCT GTGGAGGCGCTTGTCCACCCATTCTTTGACGAGCTTCGAGATCCTAATACTEST: gi|60348494|gb|DN215467.1|DN215467
genomic: ACTCCCCAAATCTGAGATGCACTGCTgtaagtgaat ... ttttgtccagGTGGAGGCGCTTGTCCACCCATTCTTTGACGAGCTTCGAGATCCTAATACT
EST: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT GTGGAGGCGCTTGTCCACCCATTCTTTGACGAGCTTCGAGATCCTAATACTEST: gi|78544269|gb|DV621767.1|DV621767
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgaat ... ttttgtccagGTGGAGGCGCTTGTCCACCCATTCTTTGACGAGCTTCGAGATCCTAATACT
EST: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT GTGGAGGCGCTTGTCCACCCATTCTTTGACGAGCTTCGAGATCCTAATACTEST: gi|32916889|gb|CF021701.1|CF021701
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgaat ... ttttgtccagGTGGAGGCGCTTGTCCACCCATTCTTTGACGAGCTTCGAGATCCTAATACT
EST: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT GTGGAGGCGCTTGTCCACCCATTCTTTGACGAGCTTCGAGATCCTAATACTEST: gi|16379449|gb|BI992951.1|BI992951
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgaat ... ttttgtccagGTGGAGGCGCTTGTCCACCCATTCTTTGACGAGCTTCGAGATCCTAATACT
EST: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT GTGGAGGCGCTTGTCCACCCATTCTTTGACGAGCTTCGAGATCCTAATACTEST: gi|5740140|gb|AI947830.1|AI947830
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgaat ... ttttgtccagGTGGAGGCGCTTGTCCACCCATTCTTTGACGAGCTTCGAGATCCTAATACT
EST: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATTTGAGATGCACTGCT GTGGAGGCGCTTGTCCACCCATTCTTTGACGAGCTTCGAGATCCTAATACTEST: gi|32865498|gb|CF005180.1|CF005180
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgaat ... ttttgtccagGTGGAGGCGCTTGTCCACCCATTCTTTGACGAGCTTCGAGATCCTAATACT
EST: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT GTGGAGGCGCTTGTCCACCCATTCTTTGACGAGCTTCGAGATCCTAATACTEST: gi|18170275|gb|BM340115.1|BM340115
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgaat ... ttttgtccagGTGGAGGCGCTTGTCCACCCATTCTTTGACGAGCTTCGAGATCCTAATACT
EST: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT GTGGAGGCGCTTGTCCACCCATTCTTTGACGAGCTTCGAGATCCTAATACTEST: gi|23357521|gb|BU645170.1|BU645170
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgaat ... ttttgtccagGTGGAGGCGCTTGTCCACCCATTCTTTGACGAGCTTCGAGATCCTAATACT
EST: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT GTGGAGGCGCTTGTCCACCCATTCTTTGACGAGCTTCGAGATCCTAATACT
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgaat ... ttttgtccagGTGGAGGCGCTTGTCCACCCATTCTTTGACGAGCTTCGAGATCCTAATACT
attacccctgtcgacttcatggttttctaacatttttatgaatctttttgtccagGTGGAGGCGCTTGTCCACCCATTCTTTGACGAGCTTCGAGATCCTAATACTCGTCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTC
ttctaac putative branch site (score: 167)
tctttttgtcc putative PPT
ttttctaacattttta TA-rich tract