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gtgtgttctctagttccatgtttctaacttatgtttcattttgaagtcctaagctttcacaaggtgattacacccgttcacttttctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTGCTAATGCTGGTGAAGAGAAACAGATTCTGGACACTAAGGTTGACCTGTC
species | Zea mays |
transcript | GRMZM5G835213_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GATGCTCAAAGTGCGATAAATGACTTGAATG GGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTGEST: gi|71436375|gb|DR817425.1|DR817425
genomic: GATGCTCAAAGTGCGATAAATGACTTGAATGgtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
EST: GATGCTCAAAGTGCGATAAATGACTTGAATG GGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTGEST: gi|71324258|gb|DR798829.1|DR798829
genomic: GATGCTCAAAGTGCGATAAATGACTTGAATGgtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
EST: GATGCTCAAAGTGCGATAAATGACTTGAATG GGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTGEST: gi|31361403|gb|CD445760.1|CD445760
genomic: GATGCTCAAAGTGCGATAAATGACTTGAATGgtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
EST: GATGCTCAAAGTGCGATAAATGACTTGAATG GGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTGEST: gi|22546594|gb|BU098905.1|BU098905
genomic: GATGCTCAAAGTGCGATAAATGACTTGAATGgtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
EST: GATGCTCAAAGTGCGATAAATGACTTGAATG GGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTGEST: gi|22545671|gb|BU098030.1|BU098030
genomic: GATGCTCAAAGTGCGATAAATGACTTGAATGgtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
EST: GATGCTCAAAGTGCGATAAATGACTTGAATG GGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTGEST: gi|29544652|gb|CB605032.1|CB605032
genomic: GATGCTCAAAGTGCGATAAATGACTTGAATGgtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
EST: GATGCTCAAAGTGCGATAAATGACTTGAATG GGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTGEST: gi|71317247|gb|DR795307.1|DR795307
genomic: GATGCTCAAAGTGCGATAAATGACTTGAATGgtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
EST: GATGCTCAAAGTGCGATAAATGACTTGAATG GGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTGEST: gi|194717059|gb|FK934212.1|FK934212
genomic: GATGCTCAAAGTGCGATAAATGACTTGAATGgtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
EST: GATGCTCAAAGTGCGATAAATGACTTGAATG GGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTGEST: gi|5268356|gb|AI770320.1|AI770320
genomic: GATGCTCAAAGTGCGATAAATGACTTGAATGgtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
EST: GATGCTCAAAGTGCGATAAATGACTTGAATG GGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTGEST: gi|26456698|gb|CA828281.1|CA828281
genomic: GATGCTCAAAGTGCGATAAATGACTTGAATGgtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
EST: GATGCTCAAAGTGCGATAAATGACTTGAATG GGAAGTGGCTT-GTAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTGEST: gi|32850339|gb|CD990020.1|CD990020
genomic: GATGCTCAAAGTGCGATAAATGACTTGAATGgtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
EST: GATGCTCAAAGTGCGATAAATGACTTGAATG GGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTGEST: gi|32866442|gb|CF006124.1|CF006124
genomic: GATGCTCAAAGTGCGATAAATGACTTGAATGgtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
EST: GATGCTCAAAGTGCGATAAATGACTTGAATG GGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
genomic: GATGCTCAAAGTGCGATAAATGACTTGAATGgtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
ttgaagtcctaagctttcacaaggtgattacacccgttcacttttctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTGCTAATGCTGGTGAAGAGAAACAGATTCTGGACACTAAGGTTGACCTGTC
cccgttcacttttct CT-rich tract
ttttcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgttctctagttccatgtttctaacttatgtttcattttgaagtcctaagctttcacaaggtgattacacccgttcacttttctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTGCTAATGCTGGTGAAGAGAAACAGATTCTGGACACTAAGGTTGACCTGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA