Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgcaatgccatttgaccccatgtcttttggttctctcccagcaaaatcatacccgtgttgattgcttggatgctaatgcctctgtaaaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGGAACGACATCCAAACCCCTGGGCTCGCCAACGTAGCCGCAACCGTGATGA

Basic information

species Zea mays
transcript GRMZM5G833389_T02
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G833389_T02 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os01g60190.1 (Oryza sativa), 3'ss of exon 9
--------------------------------------------------gtgagtgcaatgccatttgaccccatgtcttttggttctctcccagcaaaatcatacccgtgttgattgcttgga--tgctaatgcctctgtaaaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGGAACGACATCCAAACCCCTGGGCTCGCCAACGTAGCCGCAACCGTGATGA
                                                   | | ||| ||||   ||        | | | |  | |             |  |    ||  |  ||| || ||  |  |||||||| | ||||||||||||||||||||||| |||||||| || || ||||||||||| ||||||||||||   ||||| || ||||||||||||||||| || || |||||||| ||||
gtacgtgcaaatgttcatataatgctatgttttatgttgtgtgtttgttgattactgcgatgcaccttacatattcgccctgtaataccaagtagagtgctttttttttgttgttgttgatttgagtttttaatgcctatataaaacttgcagGTCCCGGTTGCTATTGGAGGTCCCGGTCTTCACCCTGGTGTGAAATTCCGGTCTGACATTCAGACCCCTGGGCTCGCCAATGTTGCTGCAACCGTAATGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37401358|gb|CF638042.1|CF638042
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|51592466|gb|CV071612.1|CV071612
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGNATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGNCTTCACCCTGGAGTGTAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|211110874|gb|FL478096.1|FL478096
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCTTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|6865073|gb|AW360423.1|AW360423
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|37378208|gb|CF625776.1|CF625776
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|60356110|gb|DN223083.1|DN223083
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|17930031|gb|BM266991.1|BM266991
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|32945368|gb|CF050187.1|CF050187
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCACGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|18167820|gb|BM337660.1|BM337660
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|60398692|gb|DN231508.1|DN231508
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|211021747|gb|FL471425.1|FL471425
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|37385277|gb|CF629772.1|CF629772
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTTAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|67016297|gb|CO445046.1|CO445046
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|78544037|gb|DV621535.1|DV621535
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|211172242|gb|FL456942.1|FL456942
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|31360915|gb|CD445272.1|CD445272
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|20300715|gb|BQ163658.1|BQ163658
EST:     TCGACAAGAATGNCCGTATCCAGATTCTTACCTCCCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|211010286|gb|FL457989.1|FL457989
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|6827946|gb|AW331589.1|AW331589
EST:     TCGACAAGAATGGCCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|37393998|gb|CF634267.1|CF634267
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|89106581|gb|DY576798.1|DY576798
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCCCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|211406276|gb|FL082336.1|FL082336
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|22490895|gb|BU050818.1|BU050818
EST:     TCGACAAGAATGCCCGTATCCAGATTCTTACCTCCCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|211110873|gb|FL478095.1|FL478095
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|37392229|gb|CF633363.1|CF633363
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|6538839|gb|AW224978.1|AW224978
EST:     TCGGCAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|60336942|gb|DN203915.1|DN203915
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|37375505|gb|CF624191.1|CF624191
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|67025128|gb|CO453877.1|CO453877
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|211244471|gb|FL127868.1|FL127868
EST:     TCGACAAAAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCCGCCG                         GTCCCCGGTTGCCATTGGAGGCCCTGGGCCTTCCCCCTGGAGGGAAA
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCC-GGTTGCCATTGGAGGCCCTGG-CCTTCACCCTGGAGTGAAA
EST: gi|67022444|gb|CO451193.1|CO451193
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCT-GTCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|211406277|gb|FL082337.1|FL082337
EST:     TCGACAAGAATGACCGTATCCAGATYCTTACCTCBYATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|40334760|gb|CK368830.1|CK368830
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|19436777|gb|BM953187.1|BM953187
EST:     AATGACCGTATCCAGATTCTTACCTCCCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: AATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|19436349|gb|BM952759.1|BM952759
EST:     CGTATCCAGATTCTTACCTCCCATACCCTTCAG-CG                         GT-CCGGTTGCCATTGGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCG
genomic: CGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATT-GGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCG
EST: gi|83278457|gb|DV942465.1|DV942465
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|4646599|gb|AI491406.2|AI491406
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|20513060|gb|BQ280246.1|BQ280246
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|32857459|gb|CD997140.1|CD997140
EST:     CGACAAGAATGACCTGNAT-CATATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: CGACAAGAATGACC-GTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|44901343|gb|CK827888.1|CK827888
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|67011723|gb|CO440472.1|CO440472
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|28909600|gb|CB331007.1|CB331007
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|19057645|gb|BM736312.1|BM736312
EST:     TGACCGTATCCAGATTCTTACCTCCCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|20300345|gb|BQ163288.1|BQ163288
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCCCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
EST: gi|71330937|gb|DR802275.1|DR802275
EST:     TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCG                         GTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG
genomic: TCGACAAGAATGACCGTATCCAGATTCTTACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaaatcatacccgtgttgattgcttggatgctaatgcctctgtaaaacttgcagGTCCCGGTTGCCATTGGAGGCCCTGGCCTTCACCCTGGAGTGAAATTCCGGAACGACATCCAAACCCCTGGGCTCGCCAACGTAGCCGCAACCGTGATGA
                             tgctaat  putative branch site (score: 2)
                                           taaaactt  TA-rich tract