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...gttcaaaactagtattgaattagattggacatagtggatattgtatgtgaggaaacatgactgtggttctatggtttagcttatcaactgttgcctacagATGCTAGCAAAGAAAGTAGATACATTACATAAAGCAAAGGAAGTGGAGGCTAAAAAGAAGAGGCAAGAGATAGCTGCTTTGGAGAAAAAATTTGCCGCGG
species | Zea mays |
transcript | GRMZM5G832989_T02 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CATGCCATGAGAAAGACCAAACTCTAAAGGACAAAGAAGATGCAATGGAG ATGCTAGCAAAGAAAGTAGATACATTACATAAAGCAAAGGAAGTGGAGGCTEST: gi|78544693|gb|DV622191.1|DV622191
genomic: CATGCCATGAGAAAGACCAAACTCTAAAGGACAAAGAAGATGCAATGGAGgtatgatgct ... ttgcctacagATGCTAGCAAAGAAAGTAGATACATTACATAAAGCAAAGGAAGTGGAGGCT
EST: CATGCCATGAGAAAGACCAAACTCTAAAGGACAAAGAAGATGCAATGGAG ATGCTAGCAAAGAAAGTAGATACATTACATAAAGCAAAGGAAGTGGAGGCTEST: gi|61119815|gb|DN560776.1|DN560776
genomic: CATGCCATGAGAAAGACCAAACTCTAAAGGACAAAGAAGATGCAATGGAGgtatgatgct ... ttgcctacagATGCTAGCAAAGAAAGTAGATACATTACATAAAGCAAAGGAAGTGGAGGCT
EST: CATGCCATGAGAAAGACCAAACTCTAAAGGACAAAGAAGATGCAATGGAG ATGCTAGCAAAGAAAGTAGATACATTACATAAAGCEST: gi|31350085|gb|CD434442.1|CD434442
genomic: CATGCCATGAGAAAGACCAAACTCTAAAGGACAAAGAAGATGCAATGGAGgtatgatgct ... ttgcctacagATGCTAGCAAAGAAAGTAGATACATTACATAAAGC
EST: CATGCCATGAGAAAGACCAAACTCTAAAGGACAAAGAAGATGCAATGGAG ATGCTAGCAAAGAAAGTAGATACATTACATAAAGCAAAGGAAGTGGAGGCTEST: gi|166600902|gb|EG321320.1|EG321320
genomic: CATGCCATGAGAAAGACCAAACTCTAAAGGACAAAGAAGATGCAATGGAGgtatgatgct ... ttgcctacagATGCTAGCAAAGAAAGTAGATACATTACATAAAGCAAAGGAAGTGGAGGCT
EST: ATGCCATGAGAAAAGACCAAACTCTAAAGGACAAAGAAGATGCAATGGAG ATGCTAGCAAAGAEST: gi|60400346|gb|DN233153.1|DN233153
genomic: ATGCCATGAG-AAAGACCAAACTCTAAAGGACAAAGAAGATGCAATGGAGgtatgatgct ... ttgcctacagATGCTAGCAAAGA
EST: CATGCCATGAGAAAGACCAAACTCTAAAGGACAAAGAAGATGCAATGGAG ATGCTAGCAAAGAAAGTAGATACATTACATAAAGCAAAGGAAGTGGAGGCTEST: gi|32934733|gb|CF039545.1|CF039545
genomic: CATGCCATGAGAAAGACCAAACTCTAAAGGACAAAGAAGATGCAATGGAGgtatgatgct ... ttgcctacagATGCTAGCAAAGAAAGTAGATACATTACATAAAGCAAAGGAAGTGGAGGCT
EST: CATGCCATGAGAAAGACCAAACTCTAAAGGACAAAGAAGATGCAATGGAG ATGCTAGCAAAGAAAGTAGATACATTACATAAAGCAAAGGAAGTGGAGGCTEST: gi|32934768|gb|CF039580.1|CF039580
genomic: CATGCCATGAGAAAGACCAAACTCTAAAGGACAAAGAAGATGCAATGGAGgtatgatgct ... ttgcctacagATGCTAGCAAAGAAAGTAGATACATTACATAAAGCAAAGGAAGTGGAGGCT
EST: CATGCCATGAGAAAGACCAAACTCTAAAGGACAAAGAAGATGCAATGGAG ATGCTAGCAAAGAAAGTAGATACATTACATAAAGCAAAGGAAGTGGAGGCTEST: gi|32934475|gb|CF039287.1|CF039287
genomic: CATGCCATGAGAAAGACCAAACTCTAAAGGACAAAGAAGATGCAATGGAGgtatgatgct ... ttgcctacagATGCTAGCAAAGAAAGTAGATACATTACATAAAGCAAAGGAAGTGGAGGCT
EST: CATGCCATGAGAAAGACCAAACTCTAAAGGACAAAGAAGATGCAATGGAG ATGCTAGCAAAGAAAGTAGATACATTACATAAAGCAAAGGAAGTGGAGGCTEST: gi|60356638|gb|DN223611.1|DN223611
genomic: CATGCCATGAGAAAGACCAAACTCTAAAGGACAAAGAAGATGCAATGGAGgtatgatgct ... ttgcctacagATGCTAGCAAAGAAAGTAGATACATTACATAAAGCAAAGGAAGTGGAGGCT
EST: CATGCCATGAGAAAGACCAAACTCTAAAGGACAAAGAAGATGCAATGGAG ATGCTAGCAAAGAAAGTAGATACATTACATAAAGCAAAGGAAGTGGAGGCTEST: gi|67041884|gb|CO468139.1|CO468139
genomic: CATGCCATGAGAAAGACCAAACTCTAAAGGACAAAGAAGATGCAATGGAGgtatgatgct ... ttgcctacagATGCTAGCAAAGAAAGTAGATACATTACATAAAGCAAAGGAAGTGGAGGCT
EST: TGCCATGGAGAAAGACCAAACTCTAAGGGACAA-GAANGATGCA-TGGAG ATGCCTAGCAA-GAAAGTAGATACATTACCTAAGGCAA-GGAAGTGGA
genomic: TGCCATG-AGAAAGACCAAACTCTAAAGGACAAAGAA-GATGCAATGGAGgtatgatgct ... ttgcctacagATGC-TAGCAAAGAAAGTAGATACATTACATAAAGCAAAGGAAGTGGA
tgtgaggaaacatgactgtggttctatggtttagcttatcaactgttgcctacagATGCTAGCAAAGAAAGTAGATACATTACATAAAGCAAAGGAAGTGGAGGCTAAAAAGAAGAGGCAAGAGATAGCTGCTTTGGAGAAAAAATTTGCCGCGG
ttatcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcaaaactagtattgaattagattggacatagtggatattgtatgtgaggaaacatgactgtggttctatggtttagcttatcaactgttgcctacagATGCTAGCAAAGAAAGTAGATACATTACATAAAGCAAAGGAAGTGGAGGCTAAAAAGAAGAGGCAAGAGATAGCTGCTTTGGAGAAAAAATTTGCCGCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA