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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctacttccttggtcattcgagcaacatcatgaccatttccttaatgttatttttttctgtcttcgttgtgttcactttgcacactttattttgctttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAAGACAGCTATTGATTGTTGTGTTTGTCGAACCTTCCTATAGTGCATTAGA

Basic information

species Zea mays
transcript GRMZM5G825902_T02
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G825902_T02 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os12g05650.1 (Oryza sativa), 3'ss of exon 9
gtctacttccttggtcattcgagcaacatcatgaccatttccttaatgttatttttttctgtcttcgttgtgtt-cactt-tgcacactttattttgctttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAAGACAGCTATTGATTGTTGTGTTTGTCGAACCTTCCTATAGTGCATTAGA
                |||  |    | | || || | || ||   |   || |||     |||  |     |   |||| |  |    |||   |||  |  ||||||| |||    |||||| |||||||||| ||||| ||||| |||||||||||||||||||| ||||| || ||     |    |||    |       |  |
--------------gtattgcaatgccttgattactactttct-gttaaaatctttggtcatctcagcaacatcatacttatatatctcttaacatgccatc-atatagGTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAAGACAGCTACTGATTCTTATGAAAACCCGGGCTTTGAGTTCCTTTCTGCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32859294|gb|CD998975.1|CD998975
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|5846978|gb|AW000057.1|AW000057
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|211056798|gb|FL037810.1|FL037810
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|60394392|gb|DN227262.1|DN227262
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|211056797|gb|FL037809.1|FL037809
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|6194531|gb|AW146635.1|AW146635
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|5762240|gb|AI967288.1|AI967288
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|40485703|gb|CK394697.1|CK394697
EST:     GTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: GTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|60354178|gb|DN221151.1|DN221151
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATATCAG                         GCGCTGTCCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|213192723|gb|FM191866.1|FM191866
EST:     AGTTTCATGTAAGTTACAGNGGTGGAAAACTNNNCAGCTCCTTATCTCNN                         NNGCTGAACAATTGCCTGCGTTATTACCTCC
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCC
EST: gi|16922165|gb|BM075455.1|BM075455
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|71762075|gb|DR960012.1|DR960012
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|5915218|gb|AW052859.1|AW052859
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|5871577|gb|AW018048.1|AW018048
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|5846763|gb|AI999846.1|AI999846
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|6031251|gb|AW076258.1|AW076258
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|67035504|gb|CO464037.1|CO464037
EST:     -GTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGAC-AATTGCCTGC
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGC
EST: gi|5597232|gb|AI891225.1|AI891225
EST:     AGTTTCATGTAAGTTCCAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|5296356|gb|AI783126.1|AI783126
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|5006113|gb|AI712175.1|AI712175
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|31355619|gb|CD439976.1|CD439976
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCC
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCC
EST: gi|24934311|gb|CA452529.1|CA452529
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|5915187|gb|AW052828.1|AW052828
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|31356321|gb|CD440678.1|CD440678
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGC-TGCGTTATTACC
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACC
EST: gi|18177029|gb|BM378239.1|BM378239
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|32859012|gb|CD998693.1|CD998693
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|6827302|gb|AW330945.1|AW330945
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|24767769|gb|CA402905.1|CA402905
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|31353042|gb|CD437399.1|CD437399
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|148950230|gb|EC895780.2|EC895780
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATTTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|5871067|gb|AW017508.1|AW017508
EST:     AGTTTCATGTAAGTTCCAGAGGTGGAAAATTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|194716957|gb|FK934116.1|FK934116
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|60394317|gb|DN227187.1|DN227187
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|5739701|gb|AI947277.1|AI947277
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|16927072|gb|BM080141.1|BM080141
EST:     AGTTTCATGTAAGTTACAGAGGGGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|32859295|gb|CD998976.1|CD998976
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|211399224|gb|FL447437.1|FL447437
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|5871038|gb|AW017614.1|AW017614
EST:     AGTTTCATGTAAGTTCCAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|31360452|gb|CD444809.1|CD444809
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAN                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|16927075|gb|BM080144.1|BM080144
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|4775819|gb|AI664824.1|AI664824
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCGATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|166428057|gb|EG077617.1|EG077617
EST:     GGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: GGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|5296224|gb|AI782904.1|AI782904
EST:     ACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCCAAGGCCTGAGACAGATGAA
genomic: ACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|149074677|gb|EE163095.2|EE163095
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|5929057|gb|AW056349.1|AW056349
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACT-AACAGCTCCTTATTTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|6194493|gb|AW146597.1|AW146597
EST:     TTTCATGTAAGTTACAGAGGTNNGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: TTTCATGTAAGTTACAGAGGT--GGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|6031249|gb|AW076256.1|AW076256
EST:     GTTTCCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: GTTT-CATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|8929966|gb|BE224730.1|BE224730
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCCCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|5860476|gb|AW011698.1|AW011698
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGT
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGT
EST: gi|5871459|gb|AW017930.1|AW017930
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|211335494|gb|FL454139.1|FL454139
EST:     TTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: TTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|6031454|gb|AW076356.1|AW076356
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 41 (upstream exon), 49 (downstream exon)
Score: 100

GGTTTGGTTGCGAAGGACAAGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAAGACAGCTATTGATTGTTGTGTTTGTCGAACCTTCCTATAGTGCATTAGA


Block sizes: 41 (upstream exon), 47 (downstream exon)
Score: 227

GGTTTGGTTGCGAAGGACAAGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAAGACAGCTATTGATTGTTGTGTTTGTCGAACCTTCCTATAGTGCATTAGA


Block sizes: 41 (upstream exon), 49 (downstream exon)
Score: 209

GGTTTGGTTGCGAAGGACAAGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAAGACAGCTATTGATTGTTGTGTTTGTCGAACCTTCCTATAGTGCATTAGA


Block sizes: 41 (upstream exon), 49 (downstream exon)
Score: 142

GGTTTGGTTGCGAAGGACAAGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAAGACAGCTATTGATTGTTGTGTTTGTCGAACCTTCCTATAGTGCATTAGA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttctgtcttcgttgtgttcactttgcacactttattttgctttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAAGACAGCTATTGATTGTTGTGTTTGTCGAACCTTCCTATAGTGCATTAGA
                                 ctttattttgcttttt  CT-rich tract
                                actttattttgctttt  TA-rich tract