1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
...agtcgcagcatatgtacattatggagctcctgtgctcctgtatgatttgggtgtattactatttccatttaacatatgggtcctcgcctttgctttctagATCATCTTTTTGGAAACATTATGTAATGACCAAGATGTTCTTGAGAGAAATATACGATTGAAAGTTCAACAAAGTCCTGATTATGCAGAGCA
species | Zea mays |
transcript | GRMZM5G824405_T02 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CAAGAATACGGAGGAACATGCTGATGAAAATGGCTGAAGGAAAATGTAAG ATCATCTTTTTGGAAACATTATGTAATGACCAAGATGTTCTTGAGAGAAATEST: gi|19437252|gb|BM953662.1|BM953662
genomic: CAAGAATACGGAGGAACATGCTGATGAAAATGGCTGAAGGAAAATGTAAGgtatgtttaa ... tgctttctagATCATCTTTTTGGAAACATTATGTAATGACCAAGATGTTCTTGAGAGAAAT
EST: CAAGAATACGGAGGAACATGCTGATGAAAATGGCTGAAGGAAAATGTAAG ATCATCTTTTTGGAAACATTATGTAATGACCAAGATGTTCTTGAGAGAAATEST: gi|22491067|gb|BU050990.1|BU050990
genomic: CAAGAATACGGAGGAACATGCTGATGAAAATGGCTGAAGGAAAATGTAAGgtatgtttaa ... tgctttctagATCATCTTTTTGGAAACATTATGTAATGACCAAGATGTTCTTGAGAGAAAT
EST: CAAGAATGCGGAGGAACATGCTGATGAAAATGGCTGAAGGAAAATGTAAG ATCATCTTTTGGGAACCATTATGTAATGCCCAAGATGTTCTTGAGAGAAATEST: gi|148957598|gb|EC903699.2|EC903699
genomic: CAAGAATACGGAGGAACATGCTGATGAAAATGGCTGAAGGAAAATGTAAGgtatgtttaa ... tgctttctagATCATCTTTTTGGAAACATTATGTAATGACCAAGATGTTCTTGAGAGAAAT
EST: CAAGAATACGGAGGAACATGCTGATGAAAATGGCTGAAGGAAAATGTAAA ATCATCTTTTTGGAAACATTATGTAATGACCEST: gi|67010650|gb|CO439399.1|CO439399
genomic: CAAGAATACGGAGGAACATGCTGATGAAAATGGCTGAAGGAAAATGTAAGgtatgtttaa ... tgctttctagATCATCTTTTTGGAAACATTATGTAATGACC
EST: GGAACATGTCTGNATGNAAAATGGGGCTGAAGGGAAAATGTAAG ATCATCTTTTTGGAAACATTATGTAATGACCAAGATGTTCTTGAGAGAAAT
genomic: GGAACATG-CTG-ATG-AAAAT--GGCTGAA-GGAAAATGTAAGgtatgtttaa ... tgctttctagATCATCTTTTTGGAAACATTATGTAATGACCAAGATGTTCTTGAGAGAAAT
tttgggtgtattactatttccatttaacatatgggtcctcgcctttgctttctagATCATCTTTTTGGAAACATTATGTAATGACCAAGATGTTCTTGAGAGAAATATACGATTGAAAGTTCAACAAAGTCCTGATTATGCAGAGCA
atttaac putative branch site (score: 157)
tcctcgcctttgcttt putative PPT
tattactattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtcgcagcatatgtacattatggagctcctgtgctcctgtatgatttgggtgtattactatttccatttaacatatgggtcctcgcctttgctttctagATCATCTTTTTGGAAACATTATGTAATGACCAAGATGTTCTTGAGAGAAATATACGATTGAAAGTTCAACAAAGTCCTGATTATGCAGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - gcagcat
- - - - - - - - - - - - -gctcctg
- - - - - - - - - - - - - - - - - - - - - tgatttg