1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...caaaatgtatctaatacaggagactgctgccaaatttgattcttattgaagggtgaattgggccgacatcttaatacctgacccaacttcttattttcagGACAGAGGAAGACGGAGACCTAGCATGGACAGTCGTCTGAAATTTGACCGTGGCAGTAACAGAGACCATGATAAAGCTGATAGAGATGGAGTCAGGTATG
species | Zea mays |
transcript | GRMZM5G817439_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGATCCTAACGCACCAGGTGGAACCCCAGTGATGCAACAGTCTGCACCA GACAGAGGAAGACGGAGACCTAGCATGGACAGTCGTCTGAAATTTGACCGTEST: gi|211493778|gb|FL172994.1|FL172994
genomic: TGATCCTAACGCACCAGGTGGAACCCCAGTGATGCAACAGTCTGCACCAgtaaggataa ... ttattttcagGACAGAGGAAGACGGAGACCTAGCATGGACAGTCGTCTGAAATTTGACCGT
EST: TGATCCTAACGCACCAGGTGGAACCCCAGTGATGCAACAGTCTGCACCA GACAGAGGAAGACGGAGACCTAGCATGGACAGTCGTCTGAAATTTGACCGTEST: gi|32862727|gb|CF002409.1|CF002409
genomic: TGATCCTAACGCACCAGGTGGAACCCCAGTGATGCAACAGTCTGCACCAgtaaggataa ... ttattttcagGACAGAGGAAGACGGAGACCTAGCATGGACAGTCGTCTGAAATTTGACCGT
EST: TGATCCTAACGCACCAGGTGGAACCCCAGTGATGCAACAGTCTGCACCA GACAGAGGAAGACGGAGACCTAGCATGGACAGTCGTCTGAAATTTGACCGTEST: gi|33092893|gb|CF052887.1|CF052887
genomic: TGATCCTAACGCACCAGGTGGAACCCCAGTGATGCAACAGTCTGCACCAgtaaggataa ... ttattttcagGACAGAGGAAGACGGAGACCTAGCATGGACAGTCGTCTGAAATTTGACCGT
EST: TGATCCTAACGCACCAGGTGGAACCCCAGTGATGCAACAGTCTGCACCA GACAGAGGAAGACGGAGACCTAGCATGGACAGTCGTCTGAAATTTGACCGTEST: gi|37394775|gb|CF634664.1|CF634664
genomic: TGATCCTAACGCACCAGGTGGAACCCCAGTGATGCAACAGTCTGCACCAgtaaggataa ... ttattttcagGACAGAGGAAGACGGAGACCTAGCATGGACAGTCGTCTGAAATTTGACCGT
EST: TGATCCTAACGCACCAGGTGGAACCCCAGTGATGCAACAGTCTGCACCA GACAGAGGAAGACGGAGACCTAGCATGGACAGTCGTCTGAAATTTGACCGTEST: gi|211077052|gb|FL065438.1|FL065438
genomic: TGATCCTAACGCACCAGGTGGAACCCCAGTGATGCAACAGTCTGCACCAgtaaggataa ... ttattttcagGACAGAGGAAGACGGAGACCTAGCATGGACAGTCGTCTGAAATTTGACCGT
EST: TGATCCTAACGCACCAGGTGGAACCCCAGTGATGCAACAGTCTGCACCA GACAGAGGAAGACGGAGACCTAGCATGGACAGTCGTCTGAAATTTGACCGT
genomic: TGATCCTAACGCACCAGGTGGAACCCCAGTGATGCAACAGTCTGCACCAgtaaggataa ... ttattttcagGACAGAGGAAGACGGAGACCTAGCATGGACAGTCGTCTGAAATTTGACCGT
ttgaagggtgaattgggccgacatcttaatacctgacccaacttcttattttcagGACAGAGGAAGACGGAGACCTAGCATGGACAGTCGTCTGAAATTTGACCGTGGCAGTAACAGAGACCATGATAAAGCTGATAGAGATGGAGTCAGGTATG
acctgac putative branch site (score: 235)
cttcttattttc putative PPT
ttcttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaaatgtatctaatacaggagactgctgccaaatttgattcttattgaagggtgaattgggccgacatcttaatacctgacccaacttcttattttcagGACAGAGGAAGACGGAGACCTAGCATGGACAGTCGTCTGAAATTTGACCGTGGCAGTAACAGAGACCATGATAAAGCTGATAGAGATGGAGTCAGGTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - actgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - -tgaattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atacctg