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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagaacatattttctgcatgtgctcggaagttctgatcatggtaagggtgcctgtctcccatgtttttttgcttactctctgctctgtactgttggtttttgcagGGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTCATACTGAATTCGGCTCATCTGAAGCCGTCGTCCAGGGCAGCAAATTTCT

Basic information

species Zea mays
transcript GRMZM5G814159_T01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G814159_T01 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os06g35030.3 (Oryza sativa), 3'ss of exon 9
gcaagaacatattttctgcatgtgctcggaagttctg-atcatggtaagggtgcctgtctcccatgtttttttgcttactctctgctctgtactgttggtttttgcagGGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTCATACTGAATTCGG-----CTCATCTGAAGCCGTCGTCCAGGGCAGCAAATTTCT
||||| | ||| |  ||    ||| ||  || |  |  ||       ||  | |    |      |   |    || ||||| |    ||  |||||      |||||||||||||| ||||||||||| |||||  | || |||||||||||||||||  ||||||  | |     ||||||||||||| |||||||||||||||||     
gcaagcaaatactccctatgcgtgttccaaactagtatattgcaaccagt-tacggcccgattgcgcaatagacctaactctttttcttgctctgtt-----ctgcagGGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTCGCACTGAAACCCGGCTCTCTCATCTGAAGCCATCGTCCAGGGCAGCAAA-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32911170|gb|CF015982.1|CF015982
EST:     ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAG                         GGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
genomic: ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAGgcaagaacat ... gtttttgcagGGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
EST: gi|78180693|gb|DV551066.1|DV551066
EST:     ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAG                         GGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
genomic: ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAGgcaagaacat ... gtttttgcagGGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
EST: gi|148929870|gb|EE285590.2|EE285590
EST:     ATTCTCGTTTTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAG                         GGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
genomic: ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAGgcaagaacat ... gtttttgcagGGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
EST: gi|6827601|gb|AW331244.1|AW331244
EST:     ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAG                         GGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
genomic: ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAGgcaagaacat ... gtttttgcagGGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
EST: gi|31363320|gb|CD447677.1|CD447677
EST:     ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAG                         GGTGAGCCCATCAAAGACACCAGTCCGCTTGCGATCGCCCCGTGTGACGTC
genomic: ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAGgcaagaacat ... gtttttgcagGGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
EST: gi|12046152|gb|BF728291.1|BF728291
EST:     ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAG                         GGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
genomic: ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAGgcaagaacat ... gtttttgcagGGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
EST: gi|67020345|gb|CO449094.1|CO449094
EST:     ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAG                         GGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
genomic: ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAGgcaagaacat ... gtttttgcagGGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
EST: gi|32860477|gb|CF000159.1|CF000159
EST:     ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAG                         GGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
genomic: ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAGgcaagaacat ... gtttttgcagGGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
EST: gi|71772178|gb|DR970115.1|DR970115
EST:     ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAG                         GGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
genomic: ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAGgcaagaacat ... gtttttgcagGGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
EST: gi|110932361|gb|EE152587.1|EE152587
EST:     ATTCTCGTTTTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAG                         GGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGGGACGTC
genomic: ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAGgcaagaacat ... gtttttgcagGGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
EST: gi|18164011|gb|BM333850.1|BM333850
EST:     ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTTCTGTTAG                         GGTGAGCCCATCAAAGACACCATGTC-GCTCGCGATCGCCCCGTGTGACGT
genomic: ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAGgcaagaacat ... gtttttgcagGGTGAGCCCATCAAAGACACCA-GTCCGCTCGCGATCGCCCCGTGTGACGT
EST: gi|32835281|gb|CD974959.1|CD974959
EST:     ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAG                         GGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
genomic: ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAGgcaagaacat ... gtttttgcagGGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
EST: gi|31909455|gb|CD650927.1|CD650927
EST:     ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAG                         GGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
genomic: ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAGgcaagaacat ... gtttttgcagGGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
EST: gi|14242646|gb|BG840348.2|BG840348
EST:     ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAG                         GGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
genomic: ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAGgcaagaacat ... gtttttgcagGGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
EST: gi|211513327|gb|FL030343.1|FL030343
EST:     ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAG                         GGTGAGCCCATCAAGGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
genomic: ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAGgcaagaacat ... gtttttgcagGGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
EST: gi|211122862|gb|FL458470.1|FL458470
EST:     ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAG                         GGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
genomic: ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAGgcaagaacat ... gtttttgcagGGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
EST: gi|6851486|gb|AW352496.1|AW352496
EST:     ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAG                         GGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
genomic: ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAGgcaagaacat ... gtttttgcagGGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
EST: gi|110190841|gb|EC872739.1|EC872739
EST:     ATTCTCGCTTTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAG                         GGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
genomic: ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAGgcaagaacat ... gtttttgcagGGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
EST: gi|33091830|gb|CF051824.1|CF051824
EST:     ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAG                         GGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
genomic: ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAGgcaagaacat ... gtttttgcagGGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
EST: gi|76292409|gb|DV031977.1|DV031977
EST:     ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAG                         GGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
genomic: ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAGgcaagaacat ... gtttttgcagGGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
EST: gi|86467992|gb|DY234362.1|DY234362
EST:     ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAG                         GGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
genomic: ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAGgcaagaacat ... gtttttgcagGGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
EST: gi|211513328|gb|FL030344.1|FL030344
EST:     ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAG                         GGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
genomic: ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAGgcaagaacat ... gtttttgcagGGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
EST: gi|32911777|gb|CF016589.1|CF016589
EST:     ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAG                         GGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
genomic: ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAGgcaagaacat ... gtttttgcagGGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
EST: gi|211375738|gb|FL457579.1|FL457579
EST:     ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAG                         GGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
genomic: ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAGgcaagaacat ... gtttttgcagGGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
EST: gi|32165016|gb|CD670334.1|CD670334
EST:     ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAG                         GGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
genomic: ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAGgcaagaacat ... gtttttgcagGGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
EST: gi|14243113|gb|BG840833.2|BG840833
EST:     ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAG                         GGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
genomic: ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAGgcaagaacat ... gtttttgcagGGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
EST: gi|18173999|gb|BM349387.1|BM349387
EST:     ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAG                         GGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
genomic: ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAGgcaagaacat ... gtttttgcagGGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
EST: gi|32835475|gb|CD975153.1|CD975153
EST:     GTTCTTGGAACGCTTCCTGTTAG                         GGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
genomic: GTTCTTGGAACGCTTCCTGTTAGgcaagaacat ... gtttttgcagGGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
EST: gi|14243826|gb|BG841499.2|BG841499
EST:     ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAG                         GGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
genomic: ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAGgcaagaacat ... gtttttgcagGGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
EST: gi|86467993|gb|DY234363.1|DY234363
EST:     ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAG                         GGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
genomic: ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAGgcaagaacat ... gtttttgcagGGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
EST: gi|32937185|gb|CF042004.1|CF042004
EST:     ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAG                         GGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCACCCCGTGTGACGTC
genomic: ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAGgcaagaacat ... gtttttgcagGGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
EST: gi|37395891|gb|CF635231.1|CF635231
EST:     ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAG                         GGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
genomic: ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAGgcaagaacat ... gtttttgcagGGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
EST: gi|67021641|gb|CO450390.1|CO450390
EST:     ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAN                         GGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
genomic: ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAGgcaagaacat ... gtttttgcagGGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
EST: gi|149099389|gb|EE185429.2|EE185429
EST:     ATTCTCGCTTTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAG                         GGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
genomic: ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAGgcaagaacat ... gtttttgcagGGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
EST: gi|31362976|gb|CD447333.1|CD447333
EST:     ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAG                         GGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
genomic: ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAGgcaagaacat ... gtttttgcagGGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
EST: gi|16926655|gb|BM079723.1|BM079723
EST:     ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAG                         GGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
genomic: ATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAGgcaagaacat ... gtttttgcagGGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC
EST: gi|20811309|gb|BQ295787.1|BQ295787
EST:     CTTGGAACGCTTCCTGTTAG                         GGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCG-GTGACGTC
genomic: CTTGGAACGCTTCCTGTTAGgcaagaacat ... gtttttgcagGGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 304

GCAGATAGTGCTATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAGgcaagaacat ... gtttttgcagGGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTCATACTGAATTCGGCTCATCTGAAGCCGTCGTCCAGGGCAGCAAATTTCT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 183

GCAGATAGTGCTATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAGgcaagaacat ... gtttttgcagGGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTCATACTGAATTCGGCTCATCTGAAGCCGTCGTCCAGGGCAGCAAATTTCT


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 145

GCAGATAGTGCTATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAGgcaagaacat ... gtttttgcagGGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTCATACTGAATTCGGCTCATCTGAAGCCGTCGTCCAGGGCAGCAAATTTCT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 268

GCAGATAGTGCTATTCTCGCTCTGAACTGCAGTGGCATTGTTCTTGGAACGCTTCCTGTTAGgcaagaacat ... gtttttgcagGGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTCATACTGAATTCGGCTCATCTGAAGCCGTCGTCCAGGGCAGCAAATTTCT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctgtctcccatgtttttttgcttactctctgctctgtactgttggtttttgcagGGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTCATACTGAATTCGGCTCATCTGAAGCCGTCGTCCAGGGCAGCAAATTTCT
                   tgcttac  putative branch site (score: 268)
                                              tttttgc  putative PPT
          atgttttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gcaagaacatattttctgcatgtgctcggaagttctgatcatggtaagggtgcctgtctcccatgtttttttgcttactctctgctctgtactgttggtttttgcagGGTGAGCCCATCAAAGACACCAGTCCGCTCGCGATCGCCCCGTGTGACGTCATACTGAATTCGGCTCATCTGAAGCCGTCGTCCAGGGCAGCAAATTTCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC