1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ggatttaactcacttaatcccgtccgatccacatggattgacatcgaaacagacagacctatgtggaacatttcgtaacgctcaaaattattatttgcagAGAGCCCTCGAACACCAAGCCGCTCAGGTGAGGACTGGAGGTCTGCCTTTGATTCATCTTCAAATGGGCCTGTTGCTACAAGCACAAACAGTGAATCAAG
species | Zea mays |
transcript | GRMZM5G811223_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGACAACAGGGCATCTGTTTCCTCGTATTCTAATGACAGCACTGAAGTTG AGAGCCCTCGAACACCAAGCCGCTCAGGTGAGGACTGGAGGTCTGCCTTTGEST: gi|211404370|gb|FL448694.1|FL448694
genomic: TGACAACAGGGCATCTGTTTCCTCGTATTCTAATGACAGCACTGAAGTTGgtaagctgct ... ttatttgcagAGAGCCCTCGAACACCAAGCCGCTCAGGTGAGGACTGGAGGTCTGCCTTTG
EST: TGACAACAGGGCATCTGTTTCCTCGTATTCTAATGACAGCACTGAAGTTG AGAGCCCTCGAACACCAAGCCGCTCAGGTGAGGACTGGAGGTCTGCCTTTGEST: gi|37374813|gb|CF623795.1|CF623795
genomic: TGACAACAGGGCATCTGTTTCCTCGTATTCTAATGACAGCACTGAAGTTGgtaagctgct ... ttatttgcagAGAGCCCTCGAACACCAAGCCGCTCAGGTGAGGACTGGAGGTCTGCCTTTG
EST: TGACAACAGGGCATCTGTTTCCTCGTATTCTAATGACAGCACTGAAGTTG AGAGCCCTCGAACACCAAGCCGCTCAGGTGAGGACTGGAGGTCTGCCTTTGEST: gi|211235185|gb|FL451892.1|FL451892
genomic: TGACAACAGGGCATCTGTTTCCTCGTATTCTAATGACAGCACTGAAGTTGgtaagctgct ... ttatttgcagAGAGCCCTCGAACACCAAGCCGCTCAGGTGAGGACTGGAGGTCTGCCTTTG
EST: TGACAACAGGGCATCTGTTTCCTCGTATTCTAATGACAGCACTGAAGTTG AGAGCCCTCGAACACCAAGCCGCTCAGGTGAGGACTGGAGGTCTGCCTTTGEST: gi|211346182|gb|FK944396.1|FK944396
genomic: TGACAACAGGGCATCTGTTTCCTCGTATTCTAATGACAGCACTGAAGTTGgtaagctgct ... ttatttgcagAGAGCCCTCGAACACCAAGCCGCTCAGGTGAGGACTGGAGGTCTGCCTTTG
EST: TGACAACAGGGCATCTGTTTCCTCGTATTCTAATGACAGCACTGAAGTTG AGAGCCCTCGAACACCAAGCCGCTCAGGTGAGGACTGGAGGTCTGCCTTTGEST: gi|211348570|gb|FK944397.1|FK944397
genomic: TGACAACAGGGCATCTGTTTCCTCGTATTCTAATGACAGCACTGAAGTTGgtaagctgct ... ttatttgcagAGAGCCCTCGAACACCAAGCCGCTCAGGTGAGGACTGGAGGTCTGCCTTTG
EST: TGACAACAGGGCATCTGTTTCCTCGTATTCTAATGACAGCACTGAAGTTG AGAGCCCTCGAACACCAAGCCGCTCAGGTGAGGACTGGAGGTCTGCCTTTGEST: gi|211249289|gb|FL482046.1|FL482046
genomic: TGACAACAGGGCATCTGTTTCCTCGTATTCTAATGACAGCACTGAAGTTGgtaagctgct ... ttatttgcagAGAGCCCTCGAACACCAAGCCGCTCAGGTGAGGACTGGAGGTCTGCCTTTG
EST: TGACAACAGGGCATCTGTTTCCTCGTATTCTAATGACAGCACTGAAGTTG AGAGCCCTCGAACACCAAGCCGCTCAGGTGAGGACTGGAGGTCTGCCTTTGEST: gi|40336978|gb|CK371048.1|CK371048
genomic: TGACAACAGGGCATCTGTTTCCTCGTATTCTAATGACAGCACTGAAGTTGgtaagctgct ... ttatttgcagAGAGCCCTCGAACACCAAGCCGCTCAGGTGAGGACTGGAGGTCTGCCTTTG
EST: TGACAACAGGGCATCTGTTTCCTCGTATTCTAATGACAGCACTGAAGTTG AGAGCCCTCGAACACCAAGCCGCTCAGGTGAGGACTGGAGGTCTGCCTTTGEST: gi|32937777|gb|CF042596.1|CF042596
genomic: TGACAACAGGGCATCTGTTTCCTCGTATTCTAATGACAGCACTGAAGTTGgtaagctgct ... ttatttgcagAGAGCCCTCGAACACCAAGCCGCTCAGGTGAGGACTGGAGGTCTGCCTTTG
EST: TGACAACAGGGCATCTGTTTCCTCGTATTCTAATGACAGCACTGAAGTTG AGAGCCCTCGAACACCAAGCCGCTCAGGTGAGGACTGGAGGTCTGCCTTTGEST: gi|211235186|gb|FL451893.1|FL451893
genomic: TGACAACAGGGCATCTGTTTCCTCGTATTCTAATGACAGCACTGAAGTTGgtaagctgct ... ttatttgcagAGAGCCCTCGAACACCAAGCCGCTCAGGTGAGGACTGGAGGTCTGCCTTTG
EST: TGACAACAGGGCATCTGTTTCCTCGTATTCTAATGACAGCACTGAAGTTG AGAGCCCTCGAACACCAAGCCGCTCAGGTGAGGACTGGAGGTCTGCCTTTGEST: gi|32942746|gb|CF047565.1|CF047565
genomic: TGACAACAGGGCATCTGTTTCCTCGTATTCTAATGACAGCACTGAAGTTGgtaagctgct ... ttatttgcagAGAGCCCTCGAACACCAAGCCGCTCAGGTGAGGACTGGAGGTCTGCCTTTG
EST: TGACAACAGGGCATCTGTTTCCTCGTATTCTAATGACAGCACTGAAGTTG AGAGCCCTCGAACACCAAGCCGCTCAGGTGAGGACTGGAGGTCTGCCTTTGEST: gi|211346179|gb|FK944393.1|FK944393
genomic: TGACAACAGGGCATCTGTTTCCTCGTATTCTAATGACAGCACTGAAGTTGgtaagctgct ... ttatttgcagAGAGCCCTCGAACACCAAGCCGCTCAGGTGAGGACTGGAGGTCTGCCTTTG
EST: TGACAACAGGGCATCTGTTTCCTCGTATTCTAATGACAGCACTGAAGTTG AGAGCCCTCGAACACCAAGCCGCTCAGGTGAGGACTGGAGGTCTGCCTTTGEST: gi|211346181|gb|FK944395.1|FK944395
genomic: TGACAACAGGGCATCTGTTTCCTCGTATTCTAATGACAGCACTGAAGTTGgtaagctgct ... ttatttgcagAGAGCCCTCGAACACCAAGCCGCTCAGGTGAGGACTGGAGGTCTGCCTTTG
EST: TGACAACAGGGCATCTGTTTCCTCGTATTCTAATGACAGCACTGAAGTTG AGAGCCCTCGAACACCAAGCCGCTCAGGTGAGGACTGGAGGTCTGCCTTTGEST: gi|211348571|gb|FK944398.1|FK944398
genomic: TGACAACAGGGCATCTGTTTCCTCGTATTCTAATGACAGCACTGAAGTTGgtaagctgct ... ttatttgcagAGAGCCCTCGAACACCAAGCCGCTCAGGTGAGGACTGGAGGTCTGCCTTTG
EST: TGACAACAGGGCATCTGTTTCCTCGTATTCTAATGACAGCACTGAAGTTG AGAGCCCTCGAACACCAAGCCGCTCAGGTGAGGACTGGAGGTCTGCCTTTGEST: gi|211346180|gb|FK944394.1|FK944394
genomic: TGACAACAGGGCATCTGTTTCCTCGTATTCTAATGACAGCACTGAAGTTGgtaagctgct ... ttatttgcagAGAGCCCTCGAACACCAAGCCGCTCAGGTGAGGACTGGAGGTCTGCCTTTG
EST: ACAACAGGGCATCTGTTTTCCTCGTATTCTAATGACAGCACTGAAGTTNG AGAGCCCTCGAACACCATGCCGCTCAGEST: gi|211348572|gb|FK944399.1|FK944399
genomic: ACAACAGGGCATCTGTTT-CCTCGTATTCTAATGACAGCACTGAAGTT-Ggtaagctgct ... ttatttgcagAGAGCCCTCGAACACCAAGCCGCTCAG
EST: TGACAACAGGGCATCTGTTTCCTCGTATTCTAATGACAGCACTGAAGTTG AGAGCCCTCGAACACCAAGCCGCTCAGGTGAGGACTGGAGGTCTGCCTTTGEST: gi|6022281|gb|AW067209.1|AW067209
genomic: TGACAACAGGGCATCTGTTTCCTCGTATTCTAATGACAGCACTGAAGTTGgtaagctgct ... ttatttgcagAGAGCCCTCGAACACCAAGCCGCTCAGGTGAGGACTGGAGGTCTGCCTTTG
EST: TGNCAACAGGGCATCTGTTTCCTCGTATTCTAATGGCAGCACTGAAGTTG AGAGCCCTCGAACCCCAAGCCGCTCAGGTGAGGACTGGAGGTCTGCCTTTGEST: gi|67010855|gb|CO439604.1|CO439604
genomic: TGACAACAGGGCATCTGTTTCCTCGTATTCTAATGACAGCACTGAAGTTGgtaagctgct ... ttatttgcagAGAGCCCTCGAACACCAAGCCGCTCAGGTGAGGACTGGAGGTCTGCCTTTG
EST: TGACAACAGGGCATCTGTTTCCTCGTATTCTAATGACAGCACTGAAGTTG AGAGCCCTCGAACACCAAGCCGCTCAGGTGAGGACTGGAGGTCTGCCTTTG
genomic: TGACAACAGGGCATCTGTTTCCTCGTATTCTAATGACAGCACTGAAGTTGgtaagctgct ... ttatttgcagAGAGCCCTCGAACACCAAGCCGCTCAGGTGAGGACTGGAGGTCTGCCTTTG
gaaacagacagacctatgtggaacatttcgtaacgctcaaaattattatttgcagAGAGCCCTCGAACACCAAGCCGCTCAGGTGAGGACTGGAGGTCTGCCTTTGATTCATCTTCAAATGGGCCTGTTGCTACAAGCACAAACAGTGAATCAAG
tcgtaac putative branch site (score: 88)
tcaaaattattattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggatttaactcacttaatcccgtccgatccacatggattgacatcgaaacagacagacctatgtggaacatttcgtaacgctcaaaattattatttgcagAGAGCCCTCGAACACCAAGCCGCTCAGGTGAGGACTGGAGGTCTGCCTTTGATTCATCTTCAAATGGGCCTGTTGCTACAAGCACAAACAGTGAATCAAG
- - - - - - - - - - - - - - -cacatgg
- - - - - - - - - - - - - - - - - - - - - - - aaacaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctatgtg