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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtacatgcattctttgccactcctgaaataattgatttaacttttcatatatatcatttttcctaacattttatattggtagGGATTTGTCTTACAACCGCTTTACTGGACCAATCCCATTCAACATTGGTTTCCTACAAGTGGCTACACT

Basic information

species Zea mays
transcript GRMZM5G809695_T02
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G809695_T02 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os06g10230.1 (Oryza sativa), 3'ss of exon 9
gtacgtacatgcattctttgccactcctgaa-ataattgatttaacttttcatatatatcatttttcctaacattt-tatattggtagGGATTTGTCTTACAACCGCTTTACTGGACCAATCCCATTCAACATTGGTTTCCTACAAGTGGCTACACT
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gtacgtatttgcagc--ttacccctcttaattacaacttttctgcttctgtgtttgtgaggtttt-cctaacatttctttcatgttagGGATTTGTCTTACAATAAACTTTCTGGATCAATTCCTTTCAACATTGGTTTCCTACAAGTTGCTACACT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211377235|gb|FL413744.1|FL413744
EST:     ACAAGTTTTCAGGTCTT                         GGATTTGTCTTACAACCGCTTTACTGGACCAATCCCATTCAACATTGGTTT
genomic: ACAAGTTTTCAGGTCTTgtacgtacat ... atattggtagGGATTTGTCTTACAACCGCTTTACTGGACCAATCCCATTCAACATTGGTTT
EST: gi|211280748|gb|FL403182.1|FL403182
EST:     GAACTGTACAAGTTTTCAGGTCTT                         GGATTTGTCTTACAACCGCTTTACTGGACCAATCCCATTCAACATTGGTTT
genomic: GAACTGTACAAGTTTTCAGGTCTTgtacgtacat ... atattggtagGGATTTGTCTTACAACCGCTTTACTGGACCAATCCCATTCAACATTGGTTT
EST: gi|211397955|gb|FL395271.1|FL395271
EST:     GAACTGTACAAGTTTTCAGGTCTT                         GGATTTGTCTTACAACCGCTTTACTGGACCAATCCCATTCAACATTGGTTT
genomic: GAACTGTACAAGTTTTCAGGTCTTgtacgtacat ... atattggtagGGATTTGTCTTACAACCGCTTTACTGGACCAATCCCATTCAACATTGGTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataattgatttaacttttcatatatatcatttttcctaacattttatattggtagGGATTTGTCTTACAACCGCTTTACTGGACCAATCCCATTCAACATTGGTTTCCTACAAGTGGCTACACT
                                 tcctaac  putative branch site (score: 1)
              ttttcatatatatcat  TA-rich tract