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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttataggcaccacaatgcagtgcctgttgaaaaattacaacgacataccatttttagactgacatcttatgttgcttgtgtgcgaaaccaattctgcagAATCCTTGGGAGCTCATAAATTTCTCGAGTCCTGCAACAATTCACATGGATTCCTTCTTATCGGTCTTCAATATCGCTGGCTTGCATGATGAGCTGTACC

Basic information

species Zea mays
transcript GRMZM5G807767_T04
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G807767_T03 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os05g50980.1 (Oryza sativa), 3'ss of exon 7
cttataggcaccacaatgcagtgcctgttgaaaaattacaacgacataccatttttagac-------tgacatcttatgttgct-tgtgtgcgaaaccaattctgcagAATCCTTGGGAGCTCATAAATTTCTCGAGTCCTGCAACAATTCACATGGATTCCTTCTTATCGGTCTTCAATATCGCTGGCTTGCATGATGAGCTGTACC
         |  || || |  ||| | |  || || ||||  | |||    |||||  |        |||| |||||| | | | ||||  |  ||| ||  || ||||||||||||||||| ||||| |||||||||  ||| |  |||||  | || |||||| | ||||||||||| || |||||||||||||||||||| ||||
-------ttaatacgataccatgcat-tgaaacaactacagtgtcatttttttttttaaaaaaaatgtgacttcttatatggttgtgtgcacacaacaaacactacagAATCCTTGGGAGCTTATAAACTTCTCGAGTGATGCCAAGATTCATCTTGACTCCTTCCTGTCGGTCTTCAACATTGCTGGCTTGCATGATGAGCTCTACC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211020790|gb|FL433478.1|FL433478
EST:     GTGGCGTCAACAGCAAATTTATGGAAAGATATGGGTTCTCATCACCAACG                         AATCCTTGGGAGCTCATAAATTTCTCGAGTCCTGCAACAATTCACATGGAT
genomic: GTGGCGTCAACAGCAAATTTATGGAAAGATATGGGTTCTCATCACCAACGgtatgaccac ... aattctgcagAATCCTTGGGAGCTCATAAATTTCTCGAGTCCTGCAACAATTCACATGGAT
EST: gi|211151156|gb|FL467091.1|FL467091
EST:     GTGGCGTCAACAGCAAATTTATGGAAAGATATGGGTTCTCATCACCAACG                         AATCCTTGGGAGCTCATAAATTTCTCGAGTCCTGCAACAATTCACATGGAT
genomic: GTGGCGTCAACAGCAAATTTATGGAAAGATATGGGTTCTCATCACCAACGgtatgaccac ... aattctgcagAATCCTTGGGAGCTCATAAATTTCTCGAGTCCTGCAACAATTCACATGGAT
EST: gi|108953379|gb|EC364711.1|EC364711
EST:     GTGGCGTCAACAGCAAATTTGTGGAAAGATATGGGTTCTCATCACCAACG                         AATCCTTGGGAGCTCATAAATTTCTCGAGTCCTGCAACAATTCACATGGAT
genomic: GTGGCGTCAACAGCAAATTTATGGAAAGATATGGGTTCTCATCACCAACGgtatgaccac ... aattctgcagAATCCTTGGGAGCTCATAAATTTCTCGAGTCCTGCAACAATTCACATGGAT
EST: gi|13557817|gb|BG549173.1|BG549173
EST:     GTGGCGTCAACAGCAAATTTATGGAAAGATATGGGTTCTCATCACCAACG                         AATCCTTGGGAGCTCATAAATTTCTCGAGTCCTGCA
genomic: GTGGCGTCAACAGCAAATTTATGGAAAGATATGGGTTCTCATCACCAACGgtatgaccac ... aattctgcagAATCCTTGGGAGCTCATAAATTTCTCGAGTCCTGCA
EST: gi|211112501|gb|FL459338.1|FL459338
EST:     GTGGCGTCAACAGCAAATTTGTGGAAAGATATGGGTTCTCATCACCAACG                         AATCCTTGGGAGCTCATAAATTTCTCGAGTCCTGCAACAATTCACATGGAT
genomic: GTGGCGTCAACAGCAAATTTATGGAAAGATATGGGTTCTCATCACCAACGgtatgaccac ... aattctgcagAATCCTTGGGAGCTCATAAATTTCTCGAGTCCTGCAACAATTCACATGGAT
EST: gi|211112500|gb|FL459337.1|FL459337
EST:     GTGGCGTCAACAGCAAATTTGTGGAAAGATATGGGTTCTCATCACCAACG                         AATCCTTGGGAGCTCATAAATTTCTCGAGTCCTGCAACAATTCACATGGAT
genomic: GTGGCGTCAACAGCAAATTTATGGAAAGATATGGGTTCTCATCACCAACGgtatgaccac ... aattctgcagAATCCTTGGGAGCTCATAAATTTCTCGAGTCCTGCAACAATTCACATGGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataccatttttagactgacatcttatgttgcttgtgtgcgaaaccaattctgcagAATCCTTGGGAGCTCATAAATTTCTCGAGTCCTGCAACAATTCACATGGATTCCTTCTTATCGGTCTTCAATATCGCTGGCTTGCATGATGAGCTGTACC
            gactgac  putative branch site (score: 2)
     atttttaga  TA-rich tract