1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatgaaccactgcacgatacttccttattggtcgttatttgtttgtttagtccataacgttgtttttgaccaccctgcttgtattttctttcagCTGCATTGACCTCAGTAGTAGAAACCGACTTTGTGGACGGAGCAGTCGTAGCAGCAGCCAGAGCATTGCCGACATGGTCAGATGGTGATGTTCCTGCAAT
species | Zea mays |
transcript | GRMZM5G807767_T03 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTTATCGGTCTTCAATATCGCTGGCTTGCATGATGAGCTGTACCACAATT CTGCATTGACCTCAGTAGTAGAAACCGACTTTGTGGACGGAGCAGTCGTAGEST: gi|211151156|gb|FL467091.1|FL467091
genomic: CTTATCGGTCTTCAATATCGCTGGCTTGCATGATGAGCTGTACCACAATTgtatgaacca ... tttctttcagCTGCATTGACCTCAGTAGTAGAAACCGACTTTGTGGACGGAGCAGTCGTAG
EST: CTTATCGGTCTTCAATATCGCTGGCTTGCATGATGAGCTGTACCACAATT CTGCATTGACCTCAGTAGTAGAAACCGACTTTGTGGACGGAGCAGTCGTAGEST: gi|108953379|gb|EC364711.1|EC364711
genomic: CTTATCGGTCTTCAATATCGCTGGCTTGCATGATGAGCTGTACCACAATTgtatgaacca ... tttctttcagCTGCATTGACCTCAGTAGTAGAAACCGACTTTGTGGACGGAGCAGTCGTAG
EST: CTTATCGGTCTTCAATATCGCTGGCTTGCATGATGAGCTGTACCACAATT CTGCATTGACCTCAGTAGTAGAAACCGACTTTGTGGACGGAGCAGTCGTAGEST: gi|211112501|gb|FL459338.1|FL459338
genomic: CTTATCGGTCTTCAATATCGCTGGCTTGCATGATGAGCTGTACCACAATTgtatgaacca ... tttctttcagCTGCATTGACCTCAGTAGTAGAAACCGACTTTGTGGACGGAGCAGTCGTAG
EST: CTTATCGGTCTTCAATATCGCTGGCTTGCATGATGAGCTGTACCACAATT CTGCATTGACCTCAGTAGTAGAAACCGACTTTGTGGACGGAGCAGTCGTAGEST: gi|211112500|gb|FL459337.1|FL459337
genomic: CTTATCGGTCTTCAATATCGCTGGCTTGCATGATGAGCTGTACCACAATTgtatgaacca ... tttctttcagCTGCATTGACCTCAGTAGTAGAAACCGACTTTGTGGACGGAGCAGTCGTAG
EST: CTTATCGGTCTTCAATATCGCTGGCTTGCATGATGAGCTGTACCACAATT CTGCATTGACCTCAGTAGTAGAAACCGACTTTGTGGACGGAGCAGTCGTAG
genomic: CTTATCGGTCTTCAATATCGCTGGCTTGCATGATGAGCTGTACCACAATTgtatgaacca ... tttctttcagCTGCATTGACCTCAGTAGTAGAAACCGACTTTGTGGACGGAGCAGTCGTAG
tgtttgtttagtccataacgttgtttttgaccaccctgcttgtattttctttcagCTGCATTGACCTCAGTAGTAGAAACCGACTTTGTGGACGGAGCAGTCGTAGCAGCAGCCAGAGCATTGCCGACATGGTCAGATGGTGATGTTCCTGCAAT
ttttgac putative branch site (score: 3)
cttgtattttctttc putative PPT
tattttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgaaccactgcacgatacttccttattggtcgttatttgtttgtttagtccataacgttgtttttgaccaccctgcttgtattttctttcagCTGCATTGACCTCAGTAGTAGAAACCGACTTTGTGGACGGAGCAGTCGTAGCAGCAGCCAGAGCATTGCCGACATGGTCAGATGGTGATGTTCCTGCAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG