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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...catgaaggaccccgacctactatgtgctttgctgtccatgcattttatggattctaaatcatttttttgaatatatggttgctacttattacaaatatagGTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAG

Basic information

species Zea mays
transcript GRMZM2G540538_T01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G540538_T01 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os02g41590.1 (Oryza sativa), 3'ss of exon 9
-----catgaaggaccccgacctactatgtgct-ttgctgtccatgcattttatggattctaaatcatttttttgaatatatggttgctacttattacaaatatagGTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAG
       ||      |        || | || | |  |||| ||| |||| ||| ||||     |||| ||   |||  || | |    ||||  ||| ||| ||||| ||  |||||||||||||| |||||||| || ||||  |||||||| |||||| | |||||||||
atagttctgtcatgtcattgagggctttctgttatctctgttcattcattatattgatttatggtcatgtt---gaaggtaagctc---acttgctactaatgtagGTTTGTGGACTACATCTTCGGTAACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213175717|gb|FM182537.1|FM182537
EST:     GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCANGAGAAGGNNNTCCC                         GTATGCTGACTACATCTTCGGCAACGAA
genomic: GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCCgtaagtctta ... acaaatatagGTATGCTGACTACATCTTCGGCAACGAA
EST: gi|1498091|gb|AA030701.1|AA030701
EST:     GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCC                         GTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
genomic: GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCCgtaagtctta ... acaaatatagGTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
EST: gi|22819672|gb|BU499762.1|BU499762
EST:     GATGCCCAAGAGAAGGTCCTCCC                         GTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
genomic: GATGCCCAAGAGAAGGTCCTCCCgtaagtctta ... acaaatatagGTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
EST: gi|60355025|gb|DN221998.1|DN221998
EST:     GTGATGCCCAAGAGAAGGTCCTCCC                         GTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
genomic: GTGATGCCCAAGAGAAGGTCCTCCCgtaagtctta ... acaaatatagGTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
EST: gi|60340909|gb|DN207882.1|DN207882
EST:     GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCC                         GTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
genomic: GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCCgtaagtctta ... acaaatatagGTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
EST: gi|18649011|gb|BM497830.1|BM497830
EST:     GCTCCCTTCATTTGGGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCC                         GTATGCTGACTACATCT
genomic: GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCCgtaagtctta ... acaaatatagGTATGCTGACTACATCT
EST: gi|211153135|gb|FL380305.1|FL380305
EST:     GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCC                         GTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
genomic: GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCCgtaagtctta ... acaaatatagGTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
EST: gi|111433446|gb|EE297763.1|EE297763
EST:     GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCC                         GTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
genomic: GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCCgtaagtctta ... acaaatatagGTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
EST: gi|60358287|gb|DN225260.1|DN225260
EST:     GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCC                         GTATGCTGACTA
genomic: GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCCgtaagtctta ... acaaatatagGTATGCTGACTA
EST: gi|78026829|gb|DV495216.1|DV495216
EST:     CCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCC                         GTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
genomic: CCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCCgtaagtctta ... acaaatatagGTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
EST: gi|60349992|gb|DN216965.1|DN216965
EST:     GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCC                         GTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
genomic: GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCCgtaagtctta ... acaaatatagGTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
EST: gi|211425413|gb|FL239286.1|FL239286
EST:     GCTCCCTTCATCTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCC                         GTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
genomic: GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCCgtaagtctta ... acaaatatagGTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
EST: gi|60359018|gb|DN225991.1|DN225991
EST:     GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCC                         GTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
genomic: GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCCgtaagtctta ... acaaatatagGTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
EST: gi|211019335|gb|FL371822.1|FL371822
EST:     GCTCCCTTCATCTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCC                         GTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
genomic: GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCCgtaagtctta ... acaaatatagGTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
EST: gi|37396080|gb|CF635327.1|CF635327
EST:     GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCC                         GTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
genomic: GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCCgtaagtctta ... acaaatatagGTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
EST: gi|71768280|gb|DR966217.1|DR966217
EST:     GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCC                         GTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
genomic: GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCCgtaagtctta ... acaaatatagGTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
EST: gi|67022254|gb|CO451003.1|CO451003
EST:     GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCC                         GTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
genomic: GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCCgtaagtctta ... acaaatatagGTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
EST: gi|37397822|gb|CF636219.1|CF636219
EST:     GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCC                         GTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
genomic: GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCCgtaagtctta ... acaaatatagGTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
EST: gi|67018775|gb|CO447524.1|CO447524
EST:     GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCC                         GTATGCTGACTACATCTTCNGCAACGAAACTGAGGCANAGATCTTTGCCAA
genomic: GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCCgtaagtctta ... acaaatatagGTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
EST: gi|60354205|gb|DN221178.1|DN221178
EST:     GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCC                         GTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
genomic: GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCCgtaagtctta ... acaaatatagGTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
EST: gi|60354850|gb|DN221823.1|DN221823
EST:     CCCAAGAGAAGGTCCTCCC                         GTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
genomic: CCCAAGAGAAGGTCCTCCCgtaagtctta ... acaaatatagGTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
EST: gi|67020661|gb|CO449410.1|CO449410
EST:     GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAAGTCCTCCC                         GTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
genomic: GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCCgtaagtctta ... acaaatatagGTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
EST: gi|44900639|gb|CK827184.1|CK827184
EST:     GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCC                         GTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
genomic: GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCCgtaagtctta ... acaaatatagGTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
EST: gi|18654716|gb|BM499521.1|BM499521
EST:     GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCC                         GTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAG
genomic: GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCCgtaagtctta ... acaaatatagGTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAG
EST: gi|9953131|gb|BE639714.1|BE639714
EST:     GCTCCCTTCATTTGTTAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCC                         GTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
genomic: GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCCgtaagtctta ... acaaatatagGTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
EST: gi|33096147|gb|CF056141.1|CF056141
EST:     GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCC                         GTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTT
genomic: GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCCgtaagtctta ... acaaatatagGTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTT
EST: gi|60340637|gb|DN207610.1|DN207610
EST:     CTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCC                         GTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
genomic: CTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCCgtaagtctta ... acaaatatagGTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
EST: gi|60348247|gb|DN215220.1|DN215220
EST:     TCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCC                         GTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
genomic: TCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCCgtaagtctta ... acaaatatagGTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
EST: gi|71768279|gb|DR966216.1|DR966216
EST:     GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCC                         GTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
genomic: GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCCgtaagtctta ... acaaatatagGTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
EST: gi|67012632|gb|CO441381.1|CO441381
EST:     GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTNCC                         GTATGCTGACTACATCTTTCG-CAACGAAACTGAGGCAAAGATCTTTGCCA
genomic: GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCCgtaagtctta ... acaaatatagGTATGCTGACTACATCTT-CGGCAACGAAACTGAGGCAAAGATCTTTGCCA
EST: gi|37400560|gb|CF637635.1|CF637635
EST:     GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCC                         GTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
genomic: GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCCgtaagtctta ... acaaatatagGTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
EST: gi|60339525|gb|DN206498.1|DN206498
EST:     GCTCCCTTCATCTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCC                         GTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
genomic: GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCCgtaagtctta ... acaaatatagGTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
EST: gi|67028257|gb|CO457006.1|CO457006
EST:     GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCC                         GTATGCTGACTACATCTTCGGCAACGAA-CTGAGGCAAAGATCTTTGCCAN
genomic: GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCCgtaagtctta ... acaaatatagGTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
EST: gi|211425412|gb|FL239285.1|FL239285
EST:     GCTCCCTTCATCTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCC                         GTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
genomic: GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCCgtaagtctta ... acaaatatagGTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
EST: gi|13150078|gb|BG320400.1|BG320400
EST:     GCTCCCTTCATCTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCC                         GTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
genomic: GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCCgtaagtctta ... acaaatatagGTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
EST: gi|29543822|gb|CB604202.1|CB604202
EST:     AGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCC                         GTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
genomic: AGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCCgtaagtctta ... acaaatatagGTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
EST: gi|32919378|gb|CF024190.1|CF024190
EST:     GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCC                         GTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
genomic: GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCCgtaagtctta ... acaaatatagGTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
EST: gi|60356286|gb|DN223259.1|DN223259
EST:     GAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCC                         GTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
genomic: GAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCCgtaagtctta ... acaaatatagGTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
EST: gi|60338916|gb|DN205889.1|DN205889
EST:     GAGAAGGTCCTCCC                         GTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
genomic: GAGAAGGTCCTCCCgtaagtctta ... acaaatatagGTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
EST: gi|211505041|gb|FL430356.1|FL430356
EST:     GCTCCCTTCATCTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCC                         GTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
genomic: GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCCgtaagtctta ... acaaatatagGTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
EST: gi|40303855|gb|CK348242.1|CK348242
EST:     GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCC                         GTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
genomic: GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCCgtaagtctta ... acaaatatagGTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
EST: gi|18654570|gb|BM499375.1|BM499375
EST:     GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCC                         GTATGCTGACTACATCTTCGGCAAACGAA
genomic: GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCCgtaagtctta ... acaaatatagGTATGCTGACTACATCTTCGGCAA-CGAA
EST: gi|37380764|gb|CF627215.1|CF627215
EST:     GCCCAAGAGAAGGTCCTCCC                         GTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
genomic: GCCCAAGAGAAGGTCCTCCCgtaagtctta ... acaaatatagGTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
EST: gi|78543928|gb|DV621426.1|DV621426
EST:     GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCC                         GTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
genomic: GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCCgtaagtctta ... acaaatatagGTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
EST: gi|16137390|gb|BI894255.1|BI894255
EST:     GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCC                         GTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
genomic: GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCCgtaagtctta ... acaaatatagGTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
EST: gi|211425411|gb|FL239284.1|FL239284
EST:     GAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCC                         GTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
genomic: GAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCCgtaagtctta ... acaaatatagGTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
EST: gi|32868038|gb|CF007720.1|CF007720
EST:     GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCC                         GTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
genomic: GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCCgtaagtctta ... acaaatatagGTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
EST: gi|5901147|gb|AW042247.1|AW042247
EST:     GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCC                         GTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
genomic: GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCCgtaagtctta ... acaaatatagGTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
EST: gi|67024289|gb|CO453038.1|CO453038
EST:     GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAAGTCCTCCC                         GTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTTGC-A
genomic: GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCCgtaagtctta ... acaaatatagGTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTT-GCCA
EST: gi|60355538|gb|DN222511.1|DN222511
EST:     GCTCCCTTCATCTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCC                         GTATGCTGACTACATC
genomic: GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCCgtaagtctta ... acaaatatagGTATGCTGACTACATC
EST: gi|60359004|gb|DN225977.1|DN225977
EST:     GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCC                         GTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
genomic: GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCCgtaagtctta ... acaaatatagGTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
EST: gi|32868039|gb|CF007721.1|CF007721
EST:     GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCC                         GTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
genomic: GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCCgtaagtctta ... acaaatatagGTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
EST: gi|22490646|gb|BU050569.1|BU050569
EST:     GAGAAGGTCCTCCC                         GTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
genomic: GAGAAGGTCCTCCCgtaagtctta ... acaaatatagGTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
EST: gi|37382673|gb|CF628297.1|CF628297
EST:     TCCGTGATGCCCAAGAGAAGGTCCTCCC                         GTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
genomic: TCCGTGATGCCCAAGAGAAGGTCCTCCCgtaagtctta ... acaaatatagGTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
EST: gi|60349736|gb|DN216709.1|DN216709
EST:     GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCC                         GTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
genomic: GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCCgtaagtctta ... acaaatatagGTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
EST: gi|67028036|gb|CO456785.1|CO456785
EST:     GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCC                         GTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
genomic: GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCCgtaagtctta ... acaaatatagGTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
EST: gi|67024355|gb|CO453104.1|CO453104
EST:     GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCC                         GTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
genomic: GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCCgtaagtctta ... acaaatatagGTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
EST: gi|67022396|gb|CO451145.1|CO451145
EST:     GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCC                         GTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
genomic: GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCCgtaagtctta ... acaaatatagGTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
EST: gi|67039373|gb|CO465628.1|CO465628
EST:     GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCC                         GTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
genomic: GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCCgtaagtctta ... acaaatatagGTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
EST: gi|37400718|gb|CF637717.1|CF637717
EST:     GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCC                         GTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
genomic: GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCCgtaagtctta ... acaaatatagGTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
EST: gi|15177615|gb|BI398554.1|BI398554
EST:     GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGATATGGTCCTCCC                         GTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA
genomic: GCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCCgtaagtctta ... acaaatatagGTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatggattctaaatcatttttttgaatatatggttgctacttattacaaatatagGTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAG
      ttctaaa  putative branch site (score: 2)
     attctaaatcattttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
catgaaggaccccgacctactatgtgctttgctgtccatgcattttatggattctaaatcatttttttgaatatatggttgctacttattacaaatatagGTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG
catgaag
- - - - - - - - - - tatgtgc
- - - - - - - - - - - - - -tttgctg
- - - - - - - - - - - - - - - - - tccatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggttgc