1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tgtgattgtcaccaacccaagcgtgttgagtatgttaccttgtcatgcccttctgtacataataaaaaaaatcttaaattgctgacttgcaagtttgcagTAAAATTGCCAGAGCTACTTGCTTCTGTCAATATGGAGGAAGATGCGTTGAACAAGCTACAGCTGAAACTGCTGGACGTTCTCAA
species | Zea mays |
transcript | GRMZM2G484880_T05 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGTCTCACCATCAACTGTATATGGAGCTGAGCATCTATTGCGCCTTTTTG TAAAATTGCCAGAGCTACTTGCTTCTGTCAATATGGAGGAAGATGCGTTGAEST: gi|37386752|gb|CF630565.1|CF630565
genomic: TGTCTCACCATCAACTGTATATGGAGCTGAGCATCTATTGCGCCTTTTTGgtacgtccaa ... aagtttgcagTAAAATTGCCAGAGCTACTTGCTTCTGTCAATATGGAGGAAGATGCGTTGA
EST: TGTCTCACCATCAACTGTATATGGAGCTGAGCATCTATTGCGCCTTTTTG TAAAATTGCCAGAGCTACTTGCTTCTGTCAATATGGAGGAAGATGCGTTGAEST: gi|31997933|gb|CD661838.1|CD661838
genomic: TGTCTCACCATCAACTGTATATGGAGCTGAGCATCTATTGCGCCTTTTTGgtacgtccaa ... aagtttgcagTAAAATTGCCAGAGCTACTTGCTTCTGTCAATATGGAGGAAGATGCGTTGA
EST: TGTCTCACCATCAACTGTATATGGAGCTGAGCATCTATTGCGCCTTTTTG TAAAATTGCCAGAGCTACTTGCTTCTGTCAATATGGAGGAAGATGCGTTGAEST: gi|211181083|gb|FL441231.1|FL441231
genomic: TGTCTCACCATCAACTGTATATGGAGCTGAGCATCTATTGCGCCTTTTTGgtacgtccaa ... aagtttgcagTAAAATTGCCAGAGCTACTTGCTTCTGTCAATATGGAGGAAGATGCGTTGA
EST: TGTCTCACCATCAACTGTATATGGAGCTGAGCATCTATTGCGCCTTTTTG TAAAATTGCCAGAGCTACTTGCTTCTGTCAATATGGAGGAAGATGCGTTGAEST: gi|60343282|gb|DN210255.1|DN210255
genomic: TGTCTCACCATCAACTGTATATGGAGCTGAGCATCTATTGCGCCTTTTTGgtacgtccaa ... aagtttgcagTAAAATTGCCAGAGCTACTTGCTTCTGTCAATATGGAGGAAGATGCGTTGA
EST: TGTCTCACCATCAACTGTATATGGAGCTGAGCATCTATTGCGCCTTTTTG TAAAATTGCCAGAGCTACTTGCTTCTGTCAATATGGAGGAAGATGCGTTGAEST: gi|211056265|gb|FL131318.1|FL131318
genomic: TGTCTCACCATCAACTGTATATGGAGCTGAGCATCTATTGCGCCTTTTTGgtacgtccaa ... aagtttgcagTAAAATTGCCAGAGCTACTTGCTTCTGTCAATATGGAGGAAGATGCGTTGA
EST: TGTCTCACCATCAACTGTATATGGAGCTGAGCATCTATTGCGCCTTTKTG TGAAATTGCCAGAGCTACTTGCEST: gi|211165206|gb|FL438738.1|FL438738
genomic: TGTCTCACCATCAACTGTATATGGAGCTGAGCATCTATTGCGCCTTTTTGgtacgtccaa ... aagtttgcagTAAAATTGCCAGAGCTACTTGC
EST: TGTCTCACCATCAACTGTATATGGAGCTGAGCATCTATTGCGCCTTTTTG TAAAATTGCCAGAGCTACTTGCTTCTGTCAATATGGAGGAAGATGCGTTGAEST: gi|20208496|gb|BQ134585.1|BQ134585
genomic: TGTCTCACCATCAACTGTATATGGAGCTGAGCATCTATTGCGCCTTTTTGgtacgtccaa ... aagtttgcagTAAAATTGCCAGAGCTACTTGCTTCTGTCAATATGGAGGAAGATGCGTTGA
EST: TGTCTCACCATCAACTGTATATGGAGCTGAGCATCTATTGCGCCCTTTTG TAAAATTGCCAGAGCTACTTGCTTCTGTCAATATGGAGGAAGATGCGTTGAEST: gi|78544095|gb|DV621593.1|DV621593
genomic: TGTCTCACCATCAACTGTATATGGAGCTGAGCATCTATTGCGCCTTTTTGgtacgtccaa ... aagtttgcagTAAAATTGCCAGAGCTACTTGCTTCTGTCAATATGGAGGAAGATGCGTTGA
EST: TGTCTCACCATCAACTGTATATGGAGCTGAGCATCTATTGCGCCTTTTTG TAAAATTGCCAGAGCTACTTGCTTCTGTCAATATGGAGGAAGATGCGTTGAEST: gi|33103032|gb|CF062992.1|CF062992
genomic: TGTCTCACCATCAACTGTATATGGAGCTGAGCATCTATTGCGCCTTTTTGgtacgtccaa ... aagtttgcagTAAAATTGCCAGAGCTACTTGCTTCTGTCAATATGGAGGAAGATGCGTTGA
EST: TGTCTCACCATCAACTGTATATGGAGCTGAGCATCTATTGCGCCTTTTTG TGAAATTGCCAGAGCTACTTGCTTCTGTTAATATGGAGGAAGATGCGTTGAEST: gi|6020484|gb|AW065412.1|AW065412
genomic: TGTCTCACCATCAACTGTATATGGAGCTGAGCATCTATTGCGCCTTTTTGgtacgtccaa ... aagtttgcagTAAAATTGCCAGAGCTACTTGCTTCTGTCAATATGGAGGAAGATGCGTTGA
EST: TGTCTCACCATCAACTGTATATGGAGCTGAGCATCTATTGCGCCTTTTTG TAAAATTGCCAGAGCTACTTGCTTCTGTCAATATGGAGGAAGATGCGTTGAEST: gi|32866884|gb|CF006566.1|CF006566
genomic: TGTCTCACCATCAACTGTATATGGAGCTGAGCATCTATTGCGCCTTTTTGgtacgtccaa ... aagtttgcagTAAAATTGCCAGAGCTACTTGCTTCTGTCAATATGGAGGAAGATGCGTTGA
EST: TGTCTCACCATCAACTGTATATGGAGCTGAGCATCTATTGCGCCTTTTTG TGAAATTGCCAGAGCTACTTGCTTCTGTTAATATGGAGGAAGATGCGTTGAEST: gi|211399030|gb|FL440153.1|FL440153
genomic: TGTCTCACCATCAACTGTATATGGAGCTGAGCATCTATTGCGCCTTTTTGgtacgtccaa ... aagtttgcagTAAAATTGCCAGAGCTACTTGCTTCTGTCAATATGGAGGAAGATGCGTTGA
EST: TGTCTCACCATCAACTGTATATGGAGCTGAGCATCTATTGCGCCTTTTTG TGAAATTGCCAGAGCTACTTGCTTCTGTTAATATGGAGGAAGATGCGTTGAEST: gi|60358481|gb|DN225454.1|DN225454
genomic: TGTCTCACCATCAACTGTATATGGAGCTGAGCATCTATTGCGCCTTTTTGgtacgtccaa ... aagtttgcagTAAAATTGCCAGAGCTACTTGCTTCTGTCAATATGGAGGAAGATGCGTTGA
EST: TGTCTCACCATCAACTGTATATGGAGCTGAGCATCTATTGCGCCTTTTTG TAAAATTGCCAGAGCTACTTGCTTCTGTCAATATGGAGGAAGATGCGTTGAEST: gi|22546502|gb|BU098813.1|BU098813
genomic: TGTCTCACCATCAACTGTATATGGAGCTGAGCATCTATTGCGCCTTTTTGgtacgtccaa ... aagtttgcagTAAAATTGCCAGAGCTACTTGCTTCTGTCAATATGGAGGAAGATGCGTTGA
EST: TGTCTTACCCTCAACTGTATATGGAGCTGAGCATCTATTGCCCCTTTTTG TAAAATTGCCAGAGCTACTTGCTTCTGTCAATATGGAGGAAGATGCGTTGAEST: gi|9952124|gb|BE638722.1|BE638722
genomic: TGTCTCACCATCAACTGTATATGGAGCTGAGCATCTATTGCGCCTTTTTGgtacgtccaa ... aagtttgcagTAAAATTGCCAGAGCTACTTGCTTCTGTCAATATGGAGGAAGATGCGTTGA
EST: GTATATGGAGCTGAGCATCTATTGCGCCTTTTTG TAAAATTGCCAGAGCTACTTGCTTCTGTCAATATGGAGGAAGATGCGTTGAEST: gi|71759434|gb|DR957371.1|DR957371
genomic: GTATATGGAGCTGAGCATCTATTGCGCCTTTTTGgtacgtccaa ... aagtttgcagTAAAATTGCCAGAGCTACTTGCTTCTGTCAATATGGAGGAAGATGCGTTGA
EST: TGTCTCACCATCAACTGTATATGGAGCTGAGCATCTATTGCGCCTTTTTG TAAAATTGCCAGAGCTACTTGCTTCTGTCAATATGGAGGAAGATGCGTTGAEST: gi|32937879|gb|CF042698.1|CF042698
genomic: TGTCTCACCATCAACTGTATATGGAGCTGAGCATCTATTGCGCCTTTTTGgtacgtccaa ... aagtttgcagTAAAATTGCCAGAGCTACTTGCTTCTGTCAATATGGAGGAAGATGCGTTGA
EST: GTATATGGAGCTGAGCATCTATTGCGCCTTTTTG TGAAATTGCCAGAGCTACTTGCTTCTGTTAATATGGAGGAAGATGCGTTGAEST: gi|22546503|gb|BU098814.1|BU098814
genomic: GTATATGGAGCTGAGCATCTATTGCGCCTTTTTGgtacgtccaa ... aagtttgcagTAAAATTGCCAGAGCTACTTGCTTCTGTCAATATGGAGGAAGATGCGTTGA
EST: TGTCTTACCATCAACTGTATATGGAGCTGAGCATCTATTGCGCCTTTTTG TAAAATTGCCAGAGCTACTTGCTTCTGTCAATATGGAGGAAGATGCGTTGAEST: gi|93284202|gb|EB676466.1|EB676466
genomic: TGTCTCACCATCAACTGTATATGGAGCTGAGCATCTATTGCGCCTTTTTGgtacgtccaa ... aagtttgcagTAAAATTGCCAGAGCTACTTGCTTCTGTCAATATGGAGGAAGATGCGTTGA
EST: TGTCTCACCATCAACTGTATATGGAGCTGAGCATCTATTGCGCCTTTTTG TAAAATTGCCAGAGCTACTTGCTTCTGTCAATATGGAGGAAGATGCGTTGAEST: gi|8666010|gb|BE186826.1|BE186826
genomic: TGTCTCACCATCAACTGTATATGGAGCTGAGCATCTATTGCGCCTTTTTGgtacgtccaa ... aagtttgcagTAAAATTGCCAGAGCTACTTGCTTCTGTCAATATGGAGGAAGATGCGTTGA
EST: CTCACCATCAACTGTATATGGAGCTGAGCATCTATTGCGCCTTTTTG TAAAATTGCCAGAGCTACTTGCTTCTGTCAATATGGAGGAAGATGCGTTGAEST: gi|211058553|gb|FK994418.1|FK994418
genomic: CTCACCATCAACTGTATATGGAGCTGAGCATCTATTGCGCCTTTTTGgtacgtccaa ... aagtttgcagTAAAATTGCCAGAGCTACTTGCTTCTGTCAATATGGAGGAAGATGCGTTGA
EST: CTATTGCGCCTTTTTG TGAAATTGCCAGAGCTACTTGCTTCTGTTAATATGGAGGAAGATSCGTTGAEST: gi|5917408|gb|AW054199.1|AW054199
genomic: CTATTGCGCCTTTTTGgtacgtccaa ... aagtttgcagTAAAATTGCCAGAGCTACTTGCTTCTGTCAATATGGAGGAAGATGCGTTGA
EST: TGTCTCACCATCAACTGTATATGGAGCTGAGCATCTATTGCGCCTTTTTG TAAAATTGCCAGAGCTACTTGCTTCTGTCAATATGGAGGAAGATGCGTTGA
genomic: TGTCTCACCATCAACTGTATATGGAGCTGAGCATCTATTGCGCCTTTTTGgtacgtccaa ... aagtttgcagTAAAATTGCCAGAGCTACTTGCTTCTGTCAATATGGAGGAAGATGCGTTGA
tgcccttctgtacataataaaaaaaatcttaaattgctgacttgcaagtttgcagTAAAATTGCCAGAGCTACTTGCTTCTGTCAATATGGAGGAAGATGCGTTGAACAAGCTACAGCTGAAACTGCTGGACGTTCTCAA
tgctgac putative branch site (score: 2)
ttctgtacataataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtgattgtcaccaacccaagcgtgttgagtatgttaccttgtcatgcccttctgtacataataaaaaaaatcttaaattgctgacttgcaagtttgcagTAAAATTGCCAGAGCTACTTGCTTCTGTCAATATGGAGGAAGATGCGTTGAACAAGCTACAGCTGAAACTGCTGGACGTTCTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA