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...tgtgattgtcaccaacccaagcgtgttgagtatgttaccttgtcatgcccttctgtacataataaaaaaaatcttaaattgctgacttgcaagtttgcagTAAAATTGCCAGAGCTACTTGCTTCTGTCAATATGGAGGAAGATGCGTTGAACAAGCTACAGCTGAAACTGCTGGACGTTCTCAA
species | Zea mays |
transcript | GRMZM2G484880_T04 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGTCTCACCATCAACTGTATATGGAGCTGAGCATCTATTGCGCCTTTTTG TAAAATTGCCAGAGCTACTTGCTTCTGTCAATATGGAGGAAGATGCGTTGAEST: gi|60358481|gb|DN225454.1|DN225454
genomic: TGTCTCACCATCAACTGTATATGGAGCTGAGCATCTATTGCGCCTTTTTGgtacgtccaa ... aagtttgcagTAAAATTGCCAGAGCTACTTGCTTCTGTCAATATGGAGGAAGATGCGTTGA
EST: TGTCTCACCATCAACTGTATATGGAGCTGAGCATCTATTGCGCCTTTTTG TAAAATTGCCAGAGCTACTTGCTTCTGTCAATATGGAGGAAGATGCGTTGAEST: gi|211056265|gb|FL131318.1|FL131318
genomic: TGTCTCACCATCAACTGTATATGGAGCTGAGCATCTATTGCGCCTTTTTGgtacgtccaa ... aagtttgcagTAAAATTGCCAGAGCTACTTGCTTCTGTCAATATGGAGGAAGATGCGTTGA
EST: TGTCTCACCATCAACTGTATATGGAGCTGAGCATCTATTGCGCCTTTKTG TGAAATTGCCAGAGCTACTTGCEST: gi|37386752|gb|CF630565.1|CF630565
genomic: TGTCTCACCATCAACTGTATATGGAGCTGAGCATCTATTGCGCCTTTTTGgtacgtccaa ... aagtttgcagTAAAATTGCCAGAGCTACTTGC
EST: TGTCTCACCATCAACTGTATATGGAGCTGAGCATCTATTGCGCCTTTTTG TAAAATTGCCAGAGCTACTTGCTTCTGTCAATATGGAGGAAGATGCGTTGAEST: gi|71438521|gb|DR819571.1|DR819571
genomic: TGTCTCACCATCAACTGTATATGGAGCTGAGCATCTATTGCGCCTTTTTGgtacgtccaa ... aagtttgcagTAAAATTGCCAGAGCTACTTGCTTCTGTCAATATGGAGGAAGATGCGTTGA
EST: TGTCTCACCATCAACTGTATATGGAGCTGAGCATCTATTGCGCCTTTTTG TAAAATTGCCAGAGCTACTTGCTTCTGTCAATATGGAGGAAGATGCGTTGAEST: gi|211181083|gb|FL441231.1|FL441231
genomic: TGTCTCACCATCAACTGTATATGGAGCTGAGCATCTATTGCGCCTTTTTGgtacgtccaa ... aagtttgcagTAAAATTGCCAGAGCTACTTGCTTCTGTCAATATGGAGGAAGATGCGTTGA
EST: TGTCTCACCATCAACTGTATATGGAGCTGAGCATCTATTGCGCCTTTTTG TAAAATTGCCAGAGCTACTTGCTTCTGTCAATATGGAGGAAGATGCGTTGA
genomic: TGTCTCACCATCAACTGTATATGGAGCTGAGCATCTATTGCGCCTTTTTGgtacgtccaa ... aagtttgcagTAAAATTGCCAGAGCTACTTGCTTCTGTCAATATGGAGGAAGATGCGTTGA
tgcccttctgtacataataaaaaaaatcttaaattgctgacttgcaagtttgcagTAAAATTGCCAGAGCTACTTGCTTCTGTCAATATGGAGGAAGATGCGTTGAACAAGCTACAGCTGAAACTGCTGGACGTTCTCAA
tgctgac putative branch site (score: 83)
ttctgtacataataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtgattgtcaccaacccaagcgtgttgagtatgttaccttgtcatgcccttctgtacataataaaaaaaatcttaaattgctgacttgcaagtttgcagTAAAATTGCCAGAGCTACTTGCTTCTGTCAATATGGAGGAAGATGCGTTGAACAAGCTACAGCTGAAACTGCTGGACGTTCTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA