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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgtacctcattttacatgagagcatgttcttattgtgctaatgcatggttgatatagtaatgaactaaaatgtccttgtttttttgtcagGGTTCACACCCATACAGTTCTTATCCTATGCAGTCACCAAACGGACAGTTCAAACTCCA

Basic information

species Zea mays
transcript GRMZM2G478779_T01
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12046414|gb|BF728553.1|BF728553
EST:     CAGCAATGTATGCACAAGGTACACCATAACAGCAGGCACCAATGCCACCG                         GGTTCACACCCATACAGTTCTTATCCTATGCAGTCACCAAACGGACAGTTC
genomic: CAGCAATGTATGCACAAGGTACACCATAACAGCAGGCACCAATGCCACCGgtaatgtacc ... tttttgtcagGGTTCACACCCATACAGTTCTTATCCTATGCAGTCACCAAACGGACAGTTC
EST: gi|166477613|gb|EG173896.1|EG173896
EST:     CAGCAATGTATGCACAAGGTACACCATAACAGCAGGCACCAATGCCACCG                         GGTTCACACCCATACAGTTCTTATCCTATGCAGTCACCAAAC
genomic: CAGCAATGTATGCACAAGGTACACCATAACAGCAGGCACCAATGCCACCGgtaatgtacc ... tttttgtcagGGTTCACACCCATACAGTTCTTATCCTATGCAGTCACCAAAC
EST: gi|78180437|gb|DV550810.1|DV550810
EST:     CAGCAATGTATGCACAAGGTACACCATAACAGCAGGCACCAATGCCACCG                         GGTTCACACCCATACAGTTCTTATCCTATGCAGTCACCAAACGGACAGTTC
genomic: CAGCAATGTATGCACAAGGTACACCATAACAGCAGGCACCAATGCCACCGgtaatgtacc ... tttttgtcagGGTTCACACCCATACAGTTCTTATCCTATGCAGTCACCAAACGGACAGTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctaatgcatggttgatatagtaatgaactaaaatgtccttgtttttttgtcagGGTTCACACCCATACAGTTCTTATCCTATGCAGTCACCAAACGGACAGTTCAAACTCCA
                           aactaaa  putative branch site (score: 2)
                                     tccttgtttttttgtc  putative PPT
                      taatgaactaaaat  TA-rich tract