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gtatggacgtttgctactacttctttagttctgatgatatgttcttgcttccagtttgtgcttgcatggaactcactgctcactgttctttcaattttgttacaagtctccacagGTACGAGCTGTGCTTCAGTGGAGAGAAGCCTCGGGGTATTGGATCGAGCTCTAATGCATCTGATGCAGAACCTGAGAAACACCAGAGCAGTAGTCACCAT
species | Zea mays |
transcript | GRMZM2G464000_T02 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GCTAGACTGAAGAAAGGAGAAGTAATAYATTTGGAGACACATTTTAATAG GTACGAGCTGTGCTTCAGTGGAGAGAAGCCTCGGGGTATTGGATCGAGCTCEST: gi|58029867|gb|CX725294.1|CX725294
genomic: GCTAGACTGAAGAAAGGAGAAGTAATATATTTGGAGACACATTTTAATAGgtatggacgt ... gtctccacagGTACGAGCTGTGCTTCAGTGGAGAGAAGCCTCGGGGTATTGGATCGAGCTC
EST: GCTAGACTGAAGAAAGGAGAAGTAATATATTTGGAGACACATTTTAATAG GTACGAGCTGTGCTTCAGTGGAGAGAAGCCTCGGGGGTATTGGATCGAGCTEST: gi|211146180|gb|FK958444.1|FK958444
genomic: GCTAGACTGAAGAAAGGAGAAGTAATATATTTGGAGACACATTTTAATAGgtatggacgt ... gtctccacagGTACGAGCTGTGCTTCAGTGGAGAGAAGCCTCGGGG-TATTGGATCGAGCT
EST: GCTAGACTGAAGAAAGGAGAAGTAATATATTTKGAGACACATTTTAATAG GTACGAGCTGTGCTTCAGTGGAGAGAAGCCTCGGGGTATTGGATCGAGCTCEST: gi|211146178|gb|FK958442.1|FK958442
genomic: GCTAGACTGAAGAAAGGAGAAGTAATATATTTGGAGACACATTTTAATAGgtatggacgt ... gtctccacagGTACGAGCTGTGCTTCAGTGGAGAGAAGCCTCGGGGTATTGGATCGAGCTC
EST: TAGACTGAAGAAAGGAGAAGTAATATATTTGGAGACACATTTTAATAG GTACGAGCTGTGCTTCAGTGGAGAGAAGCCTCGGGGTATTGGATCGAGCTCEST: gi|78077940|gb|DV506360.1|DV506360
genomic: TAGACTGAAGAAAGGAGAAGTAATATATTTGGAGACACATTTTAATAGgtatggacgt ... gtctccacagGTACGAGCTGTGCTTCAGTGGAGAGAAGCCTCGGGGTATTGGATCGAGCTC
EST: GCTAGACTGAAGAAAGGAGAAGTAATATATTTGGAGACACATTTTAATAG GTACGAGCTGTGCTTCAGTGGAGAGAAGCCTCGGGGTATTGGATCGAGCTC
genomic: GCTAGACTGAAGAAAGGAGAAGTAATATATTTGGAGACACATTTTAATAGgtatggacgt ... gtctccacagGTACGAGCTGTGCTTCAGTGGAGAGAAGCCTCGGGGTATTGGATCGAGCTC
cttgcatggaactcactgctcactgttctttcaattttgttacaagtctccacagGTACGAGCTGTGCTTCAGTGGAGAGAAGCCTCGGGGTATTGGATCGAGCTCTAATGCATCTGATGCAGAACCTGAGAAACACCAGAGCAGTAGTCACCAT
tgctcac putative branch site (score: 2)
tctccac putative PPT
tttcaattttgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggacgtttgctactacttctttagttctgatgatatgttcttgcttccagtttgtgcttgcatggaactcactgctcactgttctttcaattttgttacaagtctccacagGTACGAGCTGTGCTTCAGTGGAGAGAAGCCTCGGGGTATTGGATCGAGCTCTAATGCATCTGATGCAGAACCTGAGAAACACCAGAGCAGTAGTCACCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG