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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgatagtaatcctatttattgaaacaaatgcttttgatttaattattgcaagcagtgattttaaatatgtaaattatatatatcagATCTTTGCAAGGGAACAAGTTCTCTGGTCCTATACCATCAGTGATTGGCCTTATGCAGGCGCTTGCAGTGCT

Basic information

species Zea mays
transcript GRMZM2G463904_T02
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71447930|gb|DR828980.1|DR828980
EST:     CTTACTGGAGAAATCCCGTTCAATATTGGTTTCCTGCAAGTGGCTACGTT                         ATCTTTGCAAGGGAACAAGTTCTCTGGTCCTATACCATCAGTGATTGGCCT
genomic: CTTACTGGAGAAATCCCGTTCAATATTGGTTTCCTGCAAGTGGCTACGTTgtatgtgata ... tatatatcagATCTTTGCAAGGGAACAAGTTCTCTGGTCCTATACCATCAGTGATTGGCCT
EST: gi|71447931|gb|DR828981.1|DR828981
EST:     CTTACTGGAGAAATCCCGTTCAATATTGGTTTCCTGCAAGTGGCTACGTT                         ATCTTTGCAAGGGAACAAGTTCTCTGGTCCTATACCATCAGTGATTGGCCT
genomic: CTTACTGGAGAAATCCCGTTCAATATTGGTTTCCTGCAAGTGGCTACGTTgtatgtgata ... tatatatcagATCTTTGCAAGGGAACAAGTTCTCTGGTCCTATACCATCAGTGATTGGCCT
EST: gi|149080168|gb|EE169186.2|EE169186
EST:     CTTACTGGAGAAATCCCGTTCAATATTGGTTTCCTGCAAGTGGCTACGTT                         ATCTTTGCAGGGGAACAAGTTCTCTGGTCCTATACCA
genomic: CTTACTGGAGAAATCCCGTTCAATATTGGTTTCCTGCAAGTGGCTACGTTgtatgtgata ... tatatatcagATCTTTGCAAGGGAACAAGTTCTCTGGTCCTATACCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgatttaattattgcaagcagtgattttaaatatgtaaattatatatatcagATCTTTGCAAGGGAACAAGTTCTCTGGTCCTATACCATCAGTGATTGGCCTTATGCAGGCGCTTGCAGTGCT
     atttaat  putative branch site (score: 4)
                  aagcagtgattttaaa  TA-rich tract