Sequence
atgc intronic sequence ATGC exonic sequence...tgtattcttagtgagttctatagacctttttcagttctatcatggaactgatgcatgaattataaagattttatcattaatactcattgaattgctgcagATGTGTGGATCATCAGCTCTTCCTTCCCCACTTATGAAGAGGTGGGAGGAAGTGACAGGCCATCGTCTTTTGGAACGCTATGGTATGACTGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G460078_T03 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os01g55590.1 (Oryza sativa), 3'ss of exon 9
tgtattcttagtgagttctatagacctttttcagttctatcatg----gaactgatgcatgaattata-aagattttatcattaatactcattgaattgctgcagATGTGTGGATCATCAGCTCTTCCTTCCCCACTTATGAAGAGGTGGGAGGAAGTGACAGGCCATCGTCTTTTGGAACGCTATGGTATGACTGAG
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-gtattctttgg----cttgtaggctttattaagcactatcataatgtggactgatgtaattattatctaaatttttgttattaacattatatgaactggtgcagATGTGTGGATCATCGGCCCTTCCTTCCCCACTTATGAAACGGTGGGAGGAAGTGACAGGTCACCGTCTTTTGGAACGATACGGCATGACTGAG
upper sequence: GRMZM2G460078_T03 (Zea mays), 3'ss of exon 9
lower sequence: EFJ08604 (Selaginella moellendorffii), 3'ss of exon 7
tgtattcttagtgagttctatagacctttttcagttctatcatggaactgatgcatgaattataaagattttatcattaatactcattgaattgctgcagATGTGTGGATCATCAGCTCTTCCTTCCCCACTTATGAAGAGGTGGGAGGAAGTGACAGGCCATCGTCTTTTGGAACGCTATGGTATGACTGAG
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--------------------------------------gtaacacaatagctatttttatttct--gtatcgatcgttctttcatgatgatatggc-tagATGTGTGGATCTTCCGCTCTTCCGCTGCCAGTCTTTATACATTGGGAGAAAGTAACAGGCCATCGGCTTTTGGAACGTTACGGAATGACTGAG
upper sequence: GRMZM2G460078_T03 (Zea mays), 3'ss of exon 9
lower sequence: EFJ19769 (Selaginella moellendorffii), 3'ss of exon 8
tgtattcttagtgagttctatagacctttttcagttctatcatggaactgatgcatgaattataaagattttatcattaatactcattgaattgctgcagATGTGTGGATCATCAGCTCTTCCTTCCCCACTTATGAAGAGGTGGGAGGAAGTGACAGGCCATCGTCTTTTGGAACGCTATGGTATGACTGAG
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--------------------------------------gtaacacaatagctatttttatttct--gtatcgatcgttctttcatgatgatatggc-tagATGTGTGGATCTTCTGCTCTTCCGCTGCCAGTCTTTATACATTGGGAGAAAGTAACAGGCCATCGGCTTTTGGAACGTTACGGAATGACTGAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|14529467|gb|BI096600.1|BI096600EST: CTGATCAAAAGTCGGCCTCTTCTTACGCTGCAAAGCATCTGAGGTTAATG ATGTGTGGATCATCAGCTCTTCCTTCCCCACTTATGAAGAGGTGGGAGGAA
genomic: CTGATCAAAAGTCGGCCTCTTCTTACGCTGCAAAGCATCTGAGGTTAATGgtaatgttca ... attgctgcagATGTGTGGATCATCAGCTCTTCCTTCCCCACTTATGAAGAGGTGGGAGGAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aactgatgcatgaattataaagattttatcattaatactcattgaattgctgcagATGTGTGGATCATCAGCTCTTCCTTCCCCACTTATGAAGAGGTGGGAGGAAGTGACAGGCCATCGTCTTTTGGAACGCTATGGTATGACTGAG
cattaat putative branch site (score: 3)
aattataaagatttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgtattcttagtgagttctatagacctttttcagttctatcatggaactgatgcatgaattataaagattttatcattaatactcattgaattgctgcagATGTGTGGATCATCAGCTCTTCCTTCCCCACTTATGAAGAGGTGGGAGGAAGTGACAGGCCATCGTCTTTTGGAACGCTATGGTATGACTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA