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...aggacctatttgcgagtttagaacactttgaatagaagcttgctagtttgttaacatagatgctacttgcaccgtgtggtgatgctattgttaatttcagCGTGCGACCCATGTCTACTCTGAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG
species | Zea mays |
transcript | GRMZM2G458549_T02 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GCAAAGCACTACAAGCTATTTCAG CGTGCGACCCATGTCTACTCTGAAGCAAGGAGGGTTTATGCTTTCAGGGATEST: gi|60349907|gb|DN216880.1|DN216880
genomic: GCAAAGCACTACAAGCTATTTCAGgtggatttca ... ttaatttcagCGTGCGACCCATGTCTACTCTGAAGCAAGGAGGGTTTATGCTTTCAGGGAT
EST: AGACGTCATTGGATGTTATAAAAGCGGCAAAGCACTACAAGCTATTTCAG CGTGCGACCCATGTCTACTCTGAAGCAAGGAGGGTTTATGCTTTCAGGGATEST: gi|67018909|gb|CO447658.1|CO447658
genomic: AGACGTCATTGGATGTTATAAAAGCGGCAAAGCACTACAAGCTATTTCAGgtggatttca ... ttaatttcagCGTGCGACCCATGTCTACTCTGAAGCAAGGAGGGTTTATGCTTTCAGGGAT
EST: AGACGTCATTGGATGTTATAAAAGCGGCAAAGCACTACAAGCTATTTCAG CGTGCGACCCATGTCTACTCTTAAGCAAGGAGGGTTTATGCTTTCAGGGATEST: gi|149071532|gb|EE159923.2|EE159923
genomic: AGACGTCATTGGATGTTATAAAAGCGGCAAAGCACTACAAGCTATTTCAGgtggatttca ... ttaatttcagCGTGCGACCCATGTCTACTCTGAAGCAAGGAGGGTTTATGCTTTCAGGGAT
EST: AGACGTCATTGGATGTTATAAAAGCGGCAAAGCACTACAAGCTATTTCAG CGTGCGACCCATGTCTACTTTGAAGCAAGGAGGGTTTATGCTTTCAGGGATEST: gi|76011230|gb|DT938400.1|DT938400
genomic: AGACGTCATTGGATGTTATAAAAGCGGCAAAGCACTACAAGCTATTTCAGgtggatttca ... ttaatttcagCGTGCGACCCATGTCTACTCTGAAGCAAGGAGGGTTTATGCTTTCAGGGAT
EST: AGACGTCATTGGATGTTATAAAAGCGGCAAAGCACTACAAGCTATTTCAG CGTGCGACCCATGTCTACTCTGAAGCAAGGAGGGTTTATGCTTTCAGGGATEST: gi|78111011|gb|DV529408.1|DV529408
genomic: AGACGTCATTGGATGTTATAAAAGCGGCAAAGCACTACAAGCTATTTCAGgtggatttca ... ttaatttcagCGTGCGACCCATGTCTACTCTGAAGCAAGGAGGGTTTATGCTTTCAGGGAT
EST: AGACGTCATTGGATGTTATAAAAGCGGCAAAGCACTACAAGCTATTTCAG CGTGCGACCCATGTCTACTCTGAAGCAAGGAGGGTTTATGCTTTCAGGGATEST: gi|60338971|gb|DN205944.1|DN205944
genomic: AGACGTCATTGGATGTTATAAAAGCGGCAAAGCACTACAAGCTATTTCAGgtggatttca ... ttaatttcagCGTGCGACCCATGTCTACTCTGAAGCAAGGAGGGTTTATGCTTTCAGGGAT
EST: AGACGTCATTGGATGTTATAAAAGCGGCAAAGCACTACAAGCTATTTCAG CGTGCGACCCATGTCTACTCTGAAGCAAGGAGGGTTTATGCTTTCAGGGATEST: gi|110524608|gb|EE028792.1|EE028792
genomic: AGACGTCATTGGATGTTATAAAAGCGGCAAAGCACTACAAGCTATTTCAGgtggatttca ... ttaatttcagCGTGCGACCCATGTCTACTCTGAAGCAAGGAGGGTTTATGCTTTCAGGGAT
EST: AGACGTCATTGGATGTTATAAAAGCGGCAAAGCACTACAAGCTATTTCAG CGTGCGACCCATGTCTACTCTGAAGCAAGGAGGGTTTATGCTTTCAGGGATEST: gi|32944106|gb|CF048925.1|CF048925
genomic: AGACGTCATTGGATGTTATAAAAGCGGCAAAGCACTACAAGCTATTTCAGgtggatttca ... ttaatttcagCGTGCGACCCATGTCTACTCTGAAGCAAGGAGGGTTTATGCTTTCAGGGAT
EST: AGACGTCATTGGATGTTATAAAAGCGGCAAAGCACTACAAGCTATTTCAG CGTGCGACCCATGTCTACTCTGAAGCAAGGAGGGTTTATGCTTTCAGGGATEST: gi|88746509|gb|DY530650.1|DY530650
genomic: AGACGTCATTGGATGTTATAAAAGCGGCAAAGCACTACAAGCTATTTCAGgtggatttca ... ttaatttcagCGTGCGACCCATGTCTACTCTGAAGCAAGGAGGGTTTATGCTTTCAGGGAT
EST: TCATGGGATGTTATAAAAGCGGAAAAGCACTACAAGCTTTTTCAG CGTGCGACCCATGTCTTTTTTGAAGCAAGGAGGGTTTATGCTTTCAGGGATEST: gi|32833835|gb|CD973513.1|CD973513
genomic: TCATTGGATGTTATAAAAGCGGCAAAGCACTACAAGCTATTTCAGgtggatttca ... ttaatttcagCGTGCGACCCATGTCTACTCTGAAGCAAGGAGGGTTTATGCTTTCAGGGAT
EST: AGACGTCATTGGATGTTATAAAAGCGGCAAAGCACTACAAGCTATTTCAG CGTGCGACCCATGTCTACTCTGAAGCAAGGAGGGTTTATGCTTTCAGGGATEST: gi|87152649|gb|DY397438.1|DY397438
genomic: AGACGTCATTGGATGTTATAAAAGCGGCAAAGCACTACAAGCTATTTCAGgtggatttca ... ttaatttcagCGTGCGACCCATGTCTACTCTGAAGCAAGGAGGGTTTATGCTTTCAGGGAT
EST: AGACGTCATTGGATGTTATAAAAGCGGCAAAGCACTACAAGCTATTTCAG CGTGCGACCCATGTCTACTCTGAAGCAAGGAGGGTTTATGCTTTCAGGGATEST: gi|37386348|gb|CF630360.1|CF630360
genomic: AGACGTCATTGGATGTTATAAAAGCGGCAAAGCACTACAAGCTATTTCAGgtggatttca ... ttaatttcagCGTGCGACCCATGTCTACTCTGAAGCAAGGAGGGTTTATGCTTTCAGGGAT
EST: AGACGTCATTGGAAGTTATAAAAGCGGCAAAGCACTACAAGCTATTTCAG CGTGCGACCCATGTCTACTCTGAAGCAAGGAGAGTTTATGCTTTCAGGGATEST: gi|148960155|gb|EE153405.2|EE153405
genomic: AGACGTCATTGGATGTTATAAAAGCGGCAAAGCACTACAAGCTATTTCAGgtggatttca ... ttaatttcagCGTGCGACCCATGTCTACTCTGAAGCAAGGAGGGTTTATGCTTTCAGGGAT
EST: AGACGTCATTGGATGTTATAAAAGCGGCAAAGCACTACAAGCTATTTCAG CGTGCGACCCATGTCTACTCTGAAGCAAGGAGGGTTTATGCTTTCAGGGATEST: gi|17921536|gb|BM259187.1|BM259187
genomic: AGACGTCATTGGATGTTATAAAAGCGGCAAAGCACTACAAGCTATTTCAGgtggatttca ... ttaatttcagCGTGCGACCCATGTCTACTCTGAAGCAAGGAGGGTTTATGCTTTCAGGGAT
EST: AGACGTCATTGGATGTTATAAAAGCGGCAAAGCACTACAAGCTATTTCAG CGTGCGACCCATGTCTACTCTGAAGCAAGGAGGGTTTATGCTTTCAGGGATEST: gi|211541591|gb|FL022794.1|FL022794
genomic: AGACGTCATTGGATGTTATAAAAGCGGCAAAGCACTACAAGCTATTTCAGgtggatttca ... ttaatttcagCGTGCGACCCATGTCTACTCTGAAGCAAGGAGGGTTTATGCTTTCAGGGAT
EST: AGACGTCATTGGATGTTATAAAAGCGGCAAAGCACTACAAGCTATTTCAG CGTGCGACCCATGTCTACTCTGAAGCAAGGAGGGTTTATGCTTTCAGGGATEST: gi|17921866|gb|BM259517.1|BM259517
genomic: AGACGTCATTGGATGTTATAAAAGCGGCAAAGCACTACAAGCTATTTCAGgtggatttca ... ttaatttcagCGTGCGACCCATGTCTACTCTGAAGCAAGGAGGGTTTATGCTTTCAGGGAT
EST: AGACGTCATTGGATGTTATAAAAGCGGCAAAGCACTACAAGCTATTTCAG CGTGCGACCCATGTCTACTCTGAAGCAAGGAGGGTTTATGCTTTCAGGGATEST: gi|67016317|gb|CO445066.1|CO445066
genomic: AGACGTCATTGGATGTTATAAAAGCGGCAAAGCACTACAAGCTATTTCAGgtggatttca ... ttaatttcagCGTGCGACCCATGTCTACTCTGAAGCAAGGAGGGTTTATGCTTTCAGGGAT
EST: AGACGTCATTGGATGTTATAAAAGCGGCAAAGCACTACAAGCTATTTCAG CGTGCGACCCATGTCTACTCTGAAGCAAGGAGGGTTTATGCTTTCAGGGATEST: gi|76912625|gb|DV164824.1|DV164824
genomic: AGACGTCATTGGATGTTATAAAAGCGGCAAAGCACTACAAGCTATTTCAGgtggatttca ... ttaatttcagCGTGCGACCCATGTCTACTCTGAAGCAAGGAGGGTTTATGCTTTCAGGGAT
EST: CAAAGCACTACAAGCTATTTCAG CGTGCGACCCATGTCTATTTTGAAGCAAGGAGGGTTTATGCTTTCAGGGATEST: gi|32943061|gb|CF047880.1|CF047880
genomic: CAAAGCACTACAAGCTATTTCAGgtggatttca ... ttaatttcagCGTGCGACCCATGTCTACTCTGAAGCAAGGAGGGTTTATGCTTTCAGGGAT
EST: AGACGTCATTGGATGTTATAAAAGCGGCAAAGCACTACAAGCTATTTCAG CGTGCGACCCATGTCTACTCTGAAGCAAGGAGGGTTTATGCTTTCAGGGATEST: gi|211541592|gb|FL022795.1|FL022795
genomic: AGACGTCATTGGATGTTATAAAAGCGGCAAAGCACTACAAGCTATTTCAGgtggatttca ... ttaatttcagCGTGCGACCCATGTCTACTCTGAAGCAAGGAGGGTTTATGCTTTCAGGGAT
EST: CGTCATTGGATGTCTAAATAAAAGCGGCAAAGCACTACAAGCTATTTCAG CGTGCGACCCATGTCTACTCTGAAGCAAGGAGGGTTTATGCTTTCAGGGATEST: gi|71318358|gb|DR795941.1|DR795941
genomic: CGTCATTGGATGT-T--ATAAAAGCGGCAAAGCACTACAAGCTATTTCAGgtggatttca ... ttaatttcagCGTGCGACCCATGTCTACTCTGAAGCAAGGAGGGTTTATGCTTTCAGGGAT
EST: AGACGTCATTGGATGTTATAAAAGCGGCAAAGCACTACAAGCTATTTCAG CGTGCGACCCATGTCTACTCTGAAGCAAGGAGGGTTTATGCTTTCAGGGATEST: gi|32835728|gb|CD975406.1|CD975406
genomic: AGACGTCATTGGATGTTATAAAAGCGGCAAAGCACTACAAGCTATTTCAGgtggatttca ... ttaatttcagCGTGCGACCCATGTCTACTCTGAAGCAAGGAGGGTTTATGCTTTCAGGGAT
EST: AGACGTCATTGGATGTTATAAAAGCGGCAAAGCACTACAAGCTATTTCAG CGTGCGACCCATGTCTACTCTGAAGCAAGGAGGGTTTATGCTTTCAGGGATEST: gi|74231837|gb|DT639751.1|DT639751
genomic: AGACGTCATTGGATGTTATAAAAGCGGCAAAGCACTACAAGCTATTTCAGgtggatttca ... ttaatttcagCGTGCGACCCATGTCTACTCTGAAGCAAGGAGGGTTTATGCTTTCAGGGAT
EST: GACGTCATTGGATGTTTATAAAAGGGGCAAAGCACTACAAGCTATTTCAG CGTGCGACCCATGTTTATTTTGAAGCAAGGAGGGTTTATGTTTTCAGGGATEST: gi|50337771|gb|CO532897.1|CO532897
genomic: GACGTCATTGGATG-TTATAAAAGCGGCAAAGCACTACAAGCTATTTCAGgtggatttca ... ttaatttcagCGTGCGACCCATGTCTACTCTGAAGCAAGGAGGGTTTATGCTTTCAGGGAT
EST: GCGGCAAAGCACTACAAGCTATTTCTG CGTGCGACCCATGTCTACTCTGAAGCAAGGAGGGTTTATGCTTTCAGGGATEST: gi|71773515|gb|DR971415.1|DR971415
genomic: GCGGCAAAGCACTACAAGCTATTTCAGgtggatttca ... ttaatttcagCGTGCGACCCATGTCTACTCTGAAGCAAGGAGGGTTTATGCTTTCAGGGAT
EST: AGACGTCATTGGATGTTATAAAAGCGGCAAAGCACTACAAGCTATTTCAG CGTGCGACCCATGTCTACTTTGAAGCAAGGAGGGTTTATGCTTTCAGGGATEST: gi|78085243|gb|DV513636.1|DV513636
genomic: AGACGTCATTGGATGTTATAAAAGCGGCAAAGCACTACAAGCTATTTCAGgtggatttca ... ttaatttcagCGTGCGACCCATGTCTACTCTGAAGCAAGGAGGGTTTATGCTTTCAGGGAT
EST: GACGTCATTGGATGTTATAAAAGCGGCAAAGCACTACAAGCTATTTCAG CGTGCGACCCATGTCTACTCTGAAGCAAGGAGGGTTTATGCTTTCAGGGAT
genomic: GACGTCATTGGATGTTATAAAAGCGGCAAAGCACTACAAGCTATTTCAGgtggatttca ... ttaatttcagCGTGCGACCCATGTCTACTCTGAAGCAAGGAGGGTTTATGCTTTCAGGGAT
gtttgttaacatagatgctacttgcaccgtgtggtgatgctattgttaatttcagCGTGCGACCCATGTCTACTCTGAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG
tattgttaatttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggacctatttgcgagtttagaacactttgaatagaagcttgctagtttgttaacatagatgctacttgcaccgtgtggtgatgctattgttaatttcagCGTGCGACCCATGTCTACTCTGAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG