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gtatccttgtctaaagattaaatgtctctgaaaaaaactctgacatctggtcaaaatgatcatcgagtccatttgttgtacctaatacatatattaccttaatgagggaaatagATAAGGCTGAAGCAGGTTCTATCTACAAGATAATCGAACAGTTAGAGAGAAATCTGTACCATGCTTTCTCAACTACTTTGCTGCACACGTGCGAAACACT
species | Zea mays |
transcript | GRMZM2G457881_T04 |
intron # | 9 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: TATCGGATAAAGCATCTTCATTTCTTTCATCAGGAA ATAAGGCTGAAGCAGGTTCTATCTACAAGATAATCGAACAATTAGAGAGAAEST: gi|149023563|gb|EE154541.2|EE154541
genomic: TATCGGATAAAGCATCTTCATTTCTTTCATCAGGAAgtatccttgt ... agggaaatagATAAGGCTGAAGCAGGTTCTATCTACAAGATAATCGAACAGTTAGAGAGAA
EST: CGAAATACTACAGTTATCGGATAAAGCATCTTCATTTCTTTCATCAGGAA ATAAGGCTGAAGCAGGTTCTATCTACAAGATAATCGAACAGTTAGAGAGAAEST: gi|71322958|gb|DR798156.1|DR798156
genomic: CGAAATACTACAGTTATCGGATAAAGCATCTTCATTTCTTTCATCAGGAAgtatccttgt ... agggaaatagATAAGGCTGAAGCAGGTTCTATCTACAAGATAATCGAACAGTTAGAGAGAA
EST: CGAAATACTACAGTTATCGGATAAAGCATCTTCATTTCTTTCATCAGGAA ATAAGGCTGAAGCAGGTTCTATCTACAAGATAATCGAACAGTTAGAGAGAA
genomic: CGAAATACTACAGTTATCGGATAAAGCATCTTCATTTCTTTCATCAGGAAgtatccttgt ... agggaaatagATAAGGCTGAAGCAGGTTCTATCTACAAGATAATCGAACAGTTAGAGAGAA
tcatcgagtccatttgttgtacctaatacatatattaccttaatgagggaaatagATAAGGCTGAAGCAGGTTCTATCTACAAGATAATCGAACAGTTAGAGAGAAATCTGTACCATGCTTTCTCAACTACTTTGCTGCACACGTGCGAAACACT
ttcatatac putative branch site
taatacatatattacc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatccttgtctaaagattaaatgtctctgaaaaaaactctgacatctggtcaaaatgatcatcgagtccatttgttgtacctaatacatatattaccttaatgagggaaatagATAAGGCTGAAGCAGGTTCTATCTACAAGATAATCGAACAGTTAGAGAGAAATCTGTACCATGCTTTCTCAACTACTTTGCTGCACACGTGCGAAACACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC