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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tggtatatgtttctgataatctattccttgcatattctcttaatgaaattataaatggtagtcatgattgctggagtgtctaaattgcttgtttctgcagCATACCAAGGATCATTGGTGACTCCATCCCAATGAAGGCGACTTTTTTCATAACATATGTGATGGTTGATGGTTGGACTGGAATAGCTGGTGAAATATTG

Basic information

species Zea mays
transcript GRMZM2G456000_T01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G456000_T01 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os05g51630.2 (Oryza sativa), 3'ss of exon 8
-----tggtatatgtttctgataatctattccttgcatattctcttaatgaaattataaatggtagtcatgattgctggagtgtctaaattgcttgtttctgcagCATACCAAGGATCATTGGTGACTCCATCCCAATGAAGGCGACTTTTTTCATAACATATGTGATGGTTGATGGTTGGACTGGAATAGCTGGTGAAATATTG
     | || | | | | | | ||   |||| |  || ||||||| | |||||  |  |||| |  | |  |||    |   |||||||||  || ||| ||||| ||||| || | ||| ||||   |||| ||||||| |||||||||||||||||||||||| |||||||| |||||||||||  |||||||||||||||||
gctatttgtctgtttattttacaactcattctt--cacattctctgattgaaacca--aatgatcattacaatttgcagcaagtctaaattagttcttt-tgcagAATACCGAGAACCATCGGTGTAGCCATTCCAATGAGGGCGACTTTTTTCATAACATATGTAATGGTTGACGGTTGGACTGGTGTAGCTGGTGAAATATTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67012611|gb|CO441360.1|CO441360
EST:     ACTTATCTCC-TACATCAGCAAACGA                         CATACCAAGGATCATTGGTGACTCCATCCCAATGAAGGCGACTTTTTTCAT
genomic: ACTTATCTCCATACATCAGCAAACGAgtatgtcatg ... gtttctgcagCATACCAAGGATCATTGGTGACTCCATCCCAATGAAGGCGACTTTTTTCAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaattataaatggtagtcatgattgctggagtgtctaaattgcttgtttctgcagCATACCAAGGATCATTGGTGACTCCATCCCAATGAAGGCGACTTTTTTCATAACATATGTGATGGTTGATGGTTGGACTGGAATAGCTGGTGAAATATTG
                                gtctaaa  putative branch site (score: 3)
                                          cttgtttct  putative PPT
                                 tctaaatt  TA-rich tract