1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagtacttgttcatcactgtctcttttatggctacagtttttgctttatgcatgtccctgttgtaatgcgctgaacttgtactaatggaaattttatcattttgtccagGTATCCTGGAGTTTGGCTTATAACCCGCTGTGGCCTGTTGTTTCAGAGTCAATTTGATATTCACAACTACAAGCTCTGCATTTTGATTTTGTTCATGTAT
species | Zea mays |
transcript | GRMZM2G455476_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGCTACTCAAAATGGGCATTGGAGGGCTTCATAATTGTAAATGCCAAGAA GTATCCTGGAGTTTGGCTTATAACCCGCTGTGGCCTGTTGTTTCAGAGTCAEST: gi|20337044|gb|BQ172674.1|BQ172674
genomic: TGCTACTCAAAATGGGCATTGGAGGGCTTCATAATTGTAAATGCCAAGAAgtaagtactt ... ttttgtccagGTATCCTGGAGTTTGGCTTATAACCCGCTGTGGCCTGTTGTTTCAGAGTCA
EST: TGCTACTCAAAATGGGCATTGGAGGGCTTCATAATTGTAAATGCCAAGAA GTATCCTGGAGTTTGGCTTATAACCCGCTGTGGCCTGTTGTTTCAGAGTCAEST: gi|78543748|gb|DV621246.1|DV621246
genomic: TGCTACTCAAAATGGGCATTGGAGGGCTTCATAATTGTAAATGCCAAGAAgtaagtactt ... ttttgtccagGTATCCTGGAGTTTGGCTTATAACCCGCTGTGGCCTGTTGTTTCAGAGTCA
EST: TGCTACTCAAAATGGGCATTGGAGGGCTTCATAATTGTAAATGCCAAGAA GTATCCTGGAGTTTGGCTTATAACCCGCTGTGGCCTGTTGTTTCAGAGTCAEST: gi|166518574|gb|EG136983.1|EG136983
genomic: TGCTACTCAAAATGGGCATTGGAGGGCTTCATAATTGTAAATGCCAAGAAgtaagtactt ... ttttgtccagGTATCCTGGAGTTTGGCTTATAACCCGCTGTGGCCTGTTGTTTCAGAGTCA
EST: TGCTACTCAAAATGGGCATTGGAGGGCTTCATAATTGTAAATGCCAAGAA GTATCCTGGAGTTTGACTTATAACCCGC
genomic: TGCTACTCAAAATGGGCATTGGAGGGCTTCATAATTGTAAATGCCAAGAAgtaagtactt ... ttttgtccagGTATCCTGGAGTTTGGCTTATAACCCGC
tccctgttgtaatgcgctgaacttgtactaatggaaattttatcattttgtccagGTATCCTGGAGTTTGGCTTATAACCCGCTGTGGCCTGTTGTTTCAGAGTCAATTTGATATTCACAACTACAAGCTCTGCATTTTGATTTTGTTCATGTAT
tactaat putative branch site (score: 18)
ttttgtcc putative PPT
taatggaaattttatc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtacttgttcatcactgtctcttttatggctacagtttttgctttatgcatgtccctgttgtaatgcgctgaacttgtactaatggaaattttatcattttgtccagGTATCCTGGAGTTTGGCTTATAACCCGCTGTGGCCTGTTGTTTCAGAGTCAATTTGATATTCACAACTACAAGCTCTGCATTTTGATTTTGTTCATGTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT