1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttaaactgacattgacagagttgcataaccatacattttggaaattaaagcacactttctgtctggctaggtgtttatatgattttgttgtatttttcagATACTTGTGTTGCCACCTTATCAGGGTGAAGGCTATGGTCTTGGTCTTCTTGAAGCAATCAATTATATTGCACAGTCTAAGAACATTTACGATGTTACAA
species | Zea mays |
transcript | GRMZM2G448927_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
taaagcacactttctgtctggctaggtgtttatatgattttgttgtatttttcagATACTTGTGTTGCCACCTTATCAGGGTGAAGGCTATGGTCTTGGTCTTCTTGAAGCAATCAATTATATTGCACAGTCTAAGAACATTTACGATGTTACAA
tatttttc CT-rich tract
tttatatgattttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaaactgacattgacagagttgcataaccatacattttggaaattaaagcacactttctgtctggctaggtgtttatatgattttgttgtatttttcagATACTTGTGTTGCCACCTTATCAGGGTGAAGGCTATGGTCTTGGTCTTCTTGAAGCAATCAATTATATTGCACAGTCTAAGAACATTTACGATGTTACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - tgacatt
- - - - - - - - - agttgca
- - - - - - - - - - - - - - ccataca
- - - - - - - - - - - - - - - - - - - - - - - -aagcaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttgttg