1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtacctttttcgcccttctctacaatatatgctgatgagatattaatacattttattacatgttcctgttcctatttatttgtagCCCTATGGCCACACGCATACTTCCAACAGCTAGCTGAGACACACAGTAATGGTAATGCAAACTCAATCAACATAAGACCTACAGAGTTTGAAGATGAACC
species | Zea mays |
transcript | GRMZM2G447433_T08 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGCTTCATTCTGTTACCTGCAGTTCTTCCCATATCCCTTTGACAATGATG CCCTATGGCCACACGCATACTTCCAACAGCTAGCTGAGACACACAGTAATGEST: gi|166589552|gb|EG083350.1|EG083350
genomic: TGCTTCATTCTGTTACCTGCAGTTCTTCCCATATCCCTTTGACAATGATGgtaccttttt ... ttatttgtagCCCTATGGCCACACGCATACTTCCAACAGCTAGCTGAGACACACAGTAATG
EST: GTTCTTCCCATATCCCTTTGACAATGATG CCCTAATGGCCACACGCATACTTCCAACAGCTAGCTGAGACACACAGTAATEST: gi|16917409|gb|BM073273.1|BM073273
genomic: GTTCTTCCCATATCCCTTTGACAATGATGgtaccttttt ... ttatttgtagCCCT-ATGGCCACACGCATACTTCCAACAGCTAGCTGAGACACACAGTAAT
EST: TGCTTCATTCTGTTACCTGCAGTTCTTCCCATATCCCTTTGACAATGATG CCCTATGGCCACACGCATACTTCCAACAGCTAGCTGAGACACACAGTAATGEST: gi|71332341|gb|DR803110.1|DR803110
genomic: TGCTTCATTCTGTTACCTGCAGTTCTTCCCATATCCCTTTGACAATGATGgtaccttttt ... ttatttgtagCCCTATGGCCACACGCATACTTCCAACAGCTAGCTGAGACACACAGTAATG
EST: TGCTTCATTCTGTTACCTGCAGTTCTTCCCATATCCCTTTGACAATGATG CCCTATGGCCACACGCATACTTCCAACAGCTAGCTGAGACACACAGTAATGEST: gi|60338954|gb|DN205927.1|DN205927
genomic: TGCTTCATTCTGTTACCTGCAGTTCTTCCCATATCCCTTTGACAATGATGgtaccttttt ... ttatttgtagCCCTATGGCCACACGCATACTTCCAACAGCTAGCTGAGACACACAGTAATG
EST: TTGACAATGATG CCCTATGGCCACAGGCATACTTCCAACAGCTAGCTGAGACACACAGTAATGEST: gi|211457273|gb|FL438512.1|FL438512
genomic: TTGACAATGATGgtaccttttt ... ttatttgtagCCCTATGGCCACACGCATACTTCCAACAGCTAGCTGAGACACACAGTAATG
EST: TGCTTCATTCTGTTACCTGCAGTTCTTCCCATATCCCTTTGACAATGATG CCCTATGGCCACACGCATACTTCCAACAGCTAGCTGAGACACACAGTAATGEST: gi|60357163|gb|DN224136.1|DN224136
genomic: TGCTTCATTCTGTTACCTGCAGTTCTTCCCATATCCCTTTGACAATGATGgtaccttttt ... ttatttgtagCCCTATGGCCACACGCATACTTCCAACAGCTAGCTGAGACACACAGTAATG
EST: TGCTTCATTCTGTTACCTGCAGTTCTTCCCATATCCCTTTGACAATGATG CCCTATGGCCACACGCATACTTCCAACAGCTAGCTGAGACACACAGTAATGEST: gi|71762628|gb|DR960565.1|DR960565
genomic: TGCTTCATTCTGTTACCTGCAGTTCTTCCCATATCCCTTTGACAATGATGgtaccttttt ... ttatttgtagCCCTATGGCCACACGCATACTTCCAACAGCTAGCTGAGACACACAGTAATG
EST: TGCTTCATTCTGTTACCTGCAGTTCTTCCCATATCCCTTTGACAATGATG CCCTATGGCCACACGCATACTTCCAACAGCTAGCTGAGACACACAGTAATGEST: gi|71332342|gb|DR803111.1|DR803111
genomic: TGCTTCATTCTGTTACCTGCAGTTCTTCCCATATCCCTTTGACAATGATGgtaccttttt ... ttatttgtagCCCTATGGCCACACGCATACTTCCAACAGCTAGCTGAGACACACAGTAATG
EST: TGCTTCATTCTGTTACCTGCAGTTCTTCCCATATCCCTTTGACAATGATG CCCTATGGCCACACGCATACTTCCAACAGCTAGCTGAGACACACAGTAATGEST: gi|18166760|gb|BM336599.1|BM336599
genomic: TGCTTCATTCTGTTACCTGCAGTTCTTCCCATATCCCTTTGACAATGATGgtaccttttt ... ttatttgtagCCCTATGGCCACACGCATACTTCCAACAGCTAGCTGAGACACACAGTAATG
EST: TGCTTCATTCTGTTACCTGCAGTTCTTCCCATATCCCTTTGACAATGATG CCCTATGGCCACACGCATACTTCCAACAGCTAGCTGAGACACACAGTAATGEST: gi|60350401|gb|DN217374.1|DN217374
genomic: TGCTTCATTCTGTTACCTGCAGTTCTTCCCATATCCCTTTGACAATGATGgtaccttttt ... ttatttgtagCCCTATGGCCACACGCATACTTCCAACAGCTAGCTGAGACACACAGTAATG
EST: TGCTTCATTCTGTTACCTGCAGTTCTTCCCATATCCCTTTGACAATGATG CCCTATGGCCACACGCATACTTCCAACAGCTAGCTGAGACACACAGTAATGEST: gi|18167942|gb|BM337782.1|BM337782
genomic: TGCTTCATTCTGTTACCTGCAGTTCTTCCCATATCCCTTTGACAATGATGgtaccttttt ... ttatttgtagCCCTATGGCCACACGCATACTTCCAACAGCTAGCTGAGACACACAGTAATG
EST: TGCTTCATTCTGTTACCTGCAGTTCTTCCCATATCCCTTTGACAATGATG CCCTATGGCCACACGCATACTTCCAACAGCTAGCTGAGACACACAGTAATG
genomic: TGCTTCATTCTGTTACCTGCAGTTCTTCCCATATCCCTTTGACAATGATGgtaccttttt ... ttatttgtagCCCTATGGCCACACGCATACTTCCAACAGCTAGCTGAGACACACAGTAATG
gctgatgagatattaatacattttattacatgttcctgttcctatttatttgtagCCCTATGGCCACACGCATACTTCCAACAGCTAGCTGAGACACACAGTAATGGTAATGCAAACTCAATCAACATAAGACCTACAGAGTTTGAAGATGAACC
tattaat putative branch site (score: 2)
ttcctgttcctattt putative PPT
agatattaatacattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacctttttcgcccttctctacaatatatgctgatgagatattaatacattttattacatgttcctgttcctatttatttgtagCCCTATGGCCACACGCATACTTCCAACAGCTAGCTGAGACACACAGTAATGGTAATGCAAACTCAATCAACATAAGACCTACAGAGTTTGAAGATGAACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG