1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tgagagggttttctgctgagtgtttgcaacaatatgctaatttttgcccttcagtaaataaattgctgaatctatttctgttctttgtcacctactccagGGTCTTTCGCTGGTCTAGGTTTTCTTGCATGGTACTTGGCTGGAAAA
species | Zea mays |
transcript | GRMZM2G447433_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GAGTGTCATCAAGGAAGGTCATAAGAGTTTCCCAAGTGGGCATTCTTCAT GGTCTTTCGCTGGTCTAGGTTTTCTTGCATGGTACEST: gi|32932582|gb|CF037394.1|CF037394
genomic: GAGTGTCATCAAGGAAGGTCATAAGAGTTTCCCAAGTGGGCATTCTTCATgtaagaaatg ... cctactccagGGTCTTTCGCTGGTCTAGGTTTTCTTGCATGGTAC
EST: GAGTGTCATCAAGGAAGGTCATAAGAGTTTCCCAAGTGGGCATTCTTCAT GGTCTTTCGCTGGTCTAGGTTTTCTTGCATGGT
genomic: GAGTGTCATCAAGGAAGGTCATAAGAGTTTCCCAAGTGGGCATTCTTCATgtaagaaatg ... cctactccagGGTCTTTCGCTGGTCTAGGTTTTCTTGCATGGT
gcccttcagtaaataaattgctgaatctatttctgttctttgtcacctactccagGGTCTTTCGCTGGTCTAGGTTTTCTTGCATGGTACTTGGCTGGAAAA
cctactcc CT-rich tract
tcagtaaataaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgagagggttttctgctgagtgtttgcaacaatatgctaatttttgcccttcagtaaataaattgctgaatctatttctgttctttgtcacctactccagGGTCTTTCGCTGGTCTAGGTTTTCTTGCATGGTACTTGGCTGGAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA