Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgatcttgacacacctgtttttttattttctctaatcgattttgtatagttaataatatgttagatgaacagGTACGCTCGGATGCCAAAGGAATTGTTGCCAACAGTCATTAAAGTATTGTGCAGTAGATTACTGAACAAACACTCGAATAAGACTGAACATTATGCCGTG

Basic information

species Zea mays
transcript GRMZM2G446895_T02
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211215973|gb|FL105886.1|FL105886
EST:     TTGCTTGCGGCATTATTCAGAGTTCTCATTCTTTTGATATCTGCTACACC                         GTACGCTCGGATGCCAAAGGAATTGTTGCCAACAGTCATTAAAGTATTGTG
genomic: TTGCTTGCGGCATTATTCAGAGTTCTCATTCTTTTGATATCTGCTACACCgtatgatctt ... agatgaacagGTACGCTCGGATGCCAAAGGAATTGTTGCCAACAGTCATTAAAGTATTGTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttttattttctctaatcgattttgtatagttaataatatgttagatgaacagGTACGCTCGGATGCCAAAGGAATTGTTGCCAACAGTCATTAAAGTATTGTGCAGTAGATTACTGAACAAACACTCGAATAAGACTGAACATTATGCCGTG
                     attttgtatagttaat  TA-rich tract