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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttctgttatagtgtatgctttgtgttttgtgtagtggatgttgtcttatctgctctcaggacaaaacaggatgagaaaaaactatgttgtctatttgcagTGTCTCAAAGGCTGGGCTTAAGGCTCCTCACAACCTTTATGTGATGACGGCGACACTACTAGCTCGTAGCAACCGTTACGCTGAAATAGCATTGTTTGTG

Basic information

species Zea mays
transcript GRMZM2G444692_T02
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G444692_T03 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os10g26140.3 (Oryza sativa), 3'ss of exon 10
ttctgttatagtgtatgct-ttgtgttttgtgtagtggatgttgtcttatctgctctcaggacaaaacaggatgagaaa---aaactatgttgtctatttgcagTGTCTCAAAGGCTGGGCTTAAGGCTCCTCACAACCTTTATGTGATGACGGCGACACTACTAGCTCGTAGCAACCGTTACGCTGAAATAGCATTGTTTGTG
  |  |||| |||  |||| ||  | ||| | |     |   |  |||   | |    |||| || ||| ||  |  ||   || ||   ||  |  |||||||||||||||  |||||| | ||||||||||  ||||||| |||||||| | | ||||| || || || |||||||||||  |||||||||| |||||||| 
--catttatggtgggtgctcttaagatttttatgc--aacacttcctttctttccacaaggataatacaagacaaataacaaaagcttaatttgcattttgcagTGTCTCAAGAGCTGGGTTGAAGGCTCCTCCTAACCTTTTTGTGATGATGACAACACTGCTGGCCCGCAGCAACCGTTATCCTGAAATAGCCTTGTTTGTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211085833|gb|FL083835.1|FL083835
EST:     ATGGGTGATCCTGCATATCTTATTGCTGTCATCATAGAGTTTCTACGGAG                         TGTCTCAAAGGCTGGGCTTAAGGCTCCTCACAACCTTTATGTGATGACGGC
genomic: ATGGGTGATCCTGCATATCTTATTGCTGTCATCATAGAGTTTCTACGGAGgtaatttttg ... ctatttgcagTGTCTCAAAGGCTGGGCTTAAGGCTCCTCACAACCTTTATGTGATGACGGC
EST: gi|211085836|gb|FL083838.1|FL083838
EST:     ATGGGTGATCCTGCATATCTTATTGCTGTCATCATAGAGTTTCTACGGAG                         TGTCTCAAAGGCTGGGCTTAAGGCTCCTCACAACCTTTATGTGATGACGGC
genomic: ATGGGTGATCCTGCATATCTTATTGCTGTCATCATAGAGTTTCTACGGAGgtaatttttg ... ctatttgcagTGTCTCAAAGGCTGGGCTTAAGGCTCCTCACAACCTTTATGTGATGACGGC
EST: gi|71433592|gb|DR814642.1|DR814642
EST:     ATGGGTGATCCTGCATATCTTATTGCTGTCATCATAGAGTTTCTACGGAG                         TGTCTCAAAGGCTGGGCTTAAGGCTCCTCACAACCTTTATGTGATGACGGC
genomic: ATGGGTGATCCTGCATATCTTATTGCTGTCATCATAGAGTTTCTACGGAGgtaatttttg ... ctatttgcagTGTCTCAAAGGCTGGGCTTAAGGCTCCTCACAACCTTTATGTGATGACGGC
EST: gi|71436759|gb|DR817809.1|DR817809
EST:     ATGGGTGATCCTGCATATCTTATTGCTGTCATCATAGAGTTTCTACGGAG                         TGTCTCAAAGGCTGGGCTTAAGGCTCCTCACAACCTTTATGTGATGACGGC
genomic: ATGGGTGATCCTGCATATCTTATTGCTGTCATCATAGAGTTTCTACGGAGgtaatttttg ... ctatttgcagTGTCTCAAAGGCTGGGCTTAAGGCTCCTCACAACCTTTATGTGATGACGGC
EST: gi|116817309|gb|EC860144.1|EC860144
EST:     ATGGGTGATCCTGCATATCTTA-TGCTGTCATCATAGAGTTTCTACGGAG                         TGT-TC-AAGGCTGGGCTTAAGGCTCCTCACAACCTTTATGTGATGACGGC
genomic: ATGGGTGATCCTGCATATCTTATTGCTGTCATCATAGAGTTTCTACGGAGgtaatttttg ... ctatttgcagTGTCTCAAAGGCTGGGCTTAAGGCTCCTCACAACCTTTATGTGATGACGGC
EST: gi|33091123|gb|CF051117.1|CF051117
EST:     ATGGGTGATCCTGCATATCTTATTGCTGTCATCATAGAGTTTCTACGGAG                         TGTCTCAAAGGCTGGGCTTAAGGCTCCTCACAACCTTTATGTGATGACGGC
genomic: ATGGGTGATCCTGCATATCTTATTGCTGTCATCATAGAGTTTCTACGGAGgtaatttttg ... ctatttgcagTGTCTCAAAGGCTGGGCTTAAGGCTCCTCACAACCTTTATGTGATGACGGC
EST: gi|211085835|gb|FL083837.1|FL083837
EST:     ATGGGTGATCCTGCATATCTTATTGCTGTCATCATAGAGTTTTTACGGAG                         TGTCTCAAAGGCTGGGCTTAAGGCTCCTCACAACCTTTATGTGATGACGGC
genomic: ATGGGTGATCCTGCATATCTTATTGCTGTCATCATAGAGTTTCTACGGAGgtaatttttg ... ctatttgcagTGTCTCAAAGGCTGGGCTTAAGGCTCCTCACAACCTTTATGTGATGACGGC
EST: gi|211085832|gb|FL083834.1|FL083834
EST:     ATGGGTGATCCTGCATATCTTATTGCTGTCATCATAGAGTTTCTACGGAG                         TGTCTCAAAGGCTGGGCTTAAGGCTCCTCACAACCTTTATGTGATGACGGC
genomic: ATGGGTGATCCTGCATATCTTATTGCTGTCATCATAGAGTTTCTACGGAGgtaatttttg ... ctatttgcagTGTCTCAAAGGCTGGGCTTAAGGCTCCTCACAACCTTTATGTGATGACGGC
EST: gi|71433593|gb|DR814643.1|DR814643
EST:     ATGGGTGATCCTGCATATCTTATTGCTGTCATCATAGAGTTTCTACGGAG                         TGTCTCAAAGGCTGGGCTTAAGGCTCCTCACAACCTTTATGTGATGACGGC
genomic: ATGGGTGATCCTGCATATCTTATTGCTGTCATCATAGAGTTTCTACGGAGgtaatttttg ... ctatttgcagTGTCTCAAAGGCTGGGCTTAAGGCTCCTCACAACCTTTATGTGATGACGGC
EST: gi|71428498|gb|DR809548.1|DR809548
EST:     ATGGGTGATCCTGCATATCTTATTGCTGTCATCATAGAGTTTCTACGGAG                         TGTCTCAAAGGCTGGGCTTAAGGCTCCTCACAACCTTTATGTGATGACGGC
genomic: ATGGGTGATCCTGCATATCTTATTGCTGTCATCATAGAGTTTCTACGGAGgtaatttttg ... ctatttgcagTGTCTCAAAGGCTGGGCTTAAGGCTCCTCACAACCTTTATGTGATGACGGC
EST: gi|14206626|gb|BG840304.1|BG840304
EST:     ATGGGTGATCCTGCATATCTTATTGCTGTCATCATAGAGTTTCTACGGAG                         TGTCTCAAAGGCTGGGCTTAAGGCTCCTCACAACCTTTATGTGATGACGGC
genomic: ATGGGTGATCCTGCATATCTTATTGCTGTCATCATAGAGTTTCTACGGAGgtaatttttg ... ctatttgcagTGTCTCAAAGGCTGGGCTTAAGGCTCCTCACAACCTTTATGTGATGACGGC
EST: gi|33094193|gb|CF054187.1|CF054187
EST:     ATGGGTGATCCTGCATATCTTATTGCTGTCATCATAGAGTTTCTACGGAG                         TGTCTCAAAGGCTGGGCTTAAGGCTCCTCACAACCTTTATGTGATGACGGC
genomic: ATGGGTGATCCTGCATATCTTATTGCTGTCATCATAGAGTTTCTACGGAGgtaatttttg ... ctatttgcagTGTCTCAAAGGCTGGGCTTAAGGCTCCTCACAACCTTTATGTGATGACGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatctgctctcaggacaaaacaggatgagaaaaaactatgttgtctatttgcagTGTCTCAAAGGCTGGGCTTAAGGCTCCTCACAACCTTTATGTGATGACGGCGACACTACTAGCTCGTAGCAACCGTTACGCTGAAATAGCATTGTTTGTG
                                            tctattt  CT-rich tract
                              aaaaaactat  TA-rich tract