1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
...aagttcttgtccttgcgccccttactggtctcgagatcaaccaacttgttcattaccataaattcaactaatgatcatttacatttttttactaatgcagGTTTTATTGCACATTATGCTACTCTGGCTAGCAGGGACGTG
species | Zea mays |
transcript | GRMZM2G443985_T04 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AAGTGCTGAGAATGGTATAGGTCTTGTCAAGCTAATGGGTCGGCACAGTG GTTTTATTGCACATTATGCTACTCTGGCTAGCAGGGACGTGEST: gi|32938968|gb|CF043787.1|CF043787
genomic: AAGTGCTGAGAATGGTATAGGTCTTGTCAAGCTAATGGGTCGGCACAGTGgtaagcttct ... actaatgcagGTTTTATTGCACATTATGCTACTCTGGCTAGCAGGGACGTG
EST: AAGTGCTGAGAATGGTATAGGTCTTGTCAAGCTAATGGGTCGGCACAGTG GTTTTATTGCACATTATGCTACTCTGGCTAGCAGGGACGTGEST: gi|488227|gb|T18808.1|T18808
genomic: AAGTGCTGAGAATGGTATAGGTCTTGTCAAGCTAATGGGTCGGCACAGTGgtaagcttct ... actaatgcagGTTTTATTGCACATTATGCTACTCTGGCTAGCAGGGACGTG
EST: AAGTGCTGAGAATGGTATAGGTCTTGTCAAGCTAATGGGTCGGCACAGTG GTTTTATTGCACATTATGCTACTCTGGCTAGCAGGGACGTGEST: gi|32939806|gb|CF044625.1|CF044625
genomic: AAGTGCTGAGAATGGTATAGGTCTTGTCAAGCTAATGGGTCGGCACAGTGgtaagcttct ... actaatgcagGTTTTATTGCACATTATGCTACTCTGGCTAGCAGGGACGTG
EST: AAGTGCTGAGAATGGTATAGGTCTTGTCAAGCTAATGGGTCGGCACAGTG GTTTTATTGCACATTATGCTACTCTGGCTAGCAGGGACGTGEST: gi|32939493|gb|CF044312.1|CF044312
genomic: AAGTGCTGAGAATGGTATAGGTCTTGTCAAGCTAATGGGTCGGCACAGTGgtaagcttct ... actaatgcagGTTTTATTGCACATTATGCTACTCTGGCTAGCAGGGACGTG
EST: AAGTGCTGAGAATGGTATAGGTCTTGTCAAGCTAATGGGTCGGCACAGTG GTTTTATTGCACATTATGCTACTCTGGCTAGCAGGGACGTGEST: gi|76921243|gb|DV168509.1|DV168509
genomic: AAGTGCTGAGAATGGTATAGGTCTTGTCAAGCTAATGGGTCGGCACAGTGgtaagcttct ... actaatgcagGTTTTATTGCACATTATGCTACTCTGGCTAGCAGGGACGTG
EST: AAGTGCTGAGAATGGTATAGGTCTTGTCAAGCTAATGGGTCGGCACAGTG GTTTTATTGCACATTATGCTACTCTGGCTAGCAGGGACGTGEST: gi|211132969|gb|FL170874.1|FL170874
genomic: AAGTGCTGAGAATGGTATAGGTCTTGTCAAGCTAATGGGTCGGCACAGTGgtaagcttct ... actaatgcagGTTTTATTGCACATTATGCTACTCTGGCTAGCAGGGACGTG
EST: AAGTGCTGAGAATGGTATAGGTCTTGTCAAGCTAATGGGTCGGCACAGTG GTTTTATTGCACATTATGCTACTCTGGCTAGCAGGGACGTG
genomic: AAGTGCTGAGAATGGTATAGGTCTTGTCAAGCTAATGGGTCGGCACAGTGgtaagcttct ... actaatgcagGTTTTATTGCACATTATGCTACTCTGGCTAGCAGGGACGTG
ttgttcattaccataaattcaactaatgatcatttacatttttttactaatgcagGTTTTATTGCACATTATGCTACTCTGGCTAGCAGGGACGTG
tactaat putative branch site (score: 306)
tttttttact CT-rich tract
ataaattcaactaatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagttcttgtccttgcgccccttactggtctcgagatcaaccaacttgttcattaccataaattcaactaatgatcatttacatttttttactaatgcagGTTTTATTGCACATTATGCTACTCTGGCTAGCAGGGACGTG
- gttcttg
- - - - -tccttgc
- - - - - - - - - - - tactggt
- - - - - - - - - - - - - - - - - - -caaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caactaa