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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gacagaccttgaagcttttactctttttaggttacaagtttaacttttcatttcatggaaatttggtagtaacattgtgattggtgctcttgtcttttagGCTTGAGAATACACTTAACTATGGCCTTGAACGAGTTTGGGCATTAGGTTACATGAAGGGCTCACGAAG

Basic information

species Zea mays
transcript GRMZM2G443953_T03
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G443953_T01 (Zea mays), 3'ss of exon 9
lower sequence: AT1G79990.1 (Arabidopsis thaliana), 3'ss of exon 12
-------------gacagaccttgaagcttttactctttttaggttacaagtttaacttttcatttcatggaaatttggtagtaacattgtgattggtgct-cttgtcttttagGCTTGAGAATACACTTAACTATGGCCTTGAACGAGTTTGGGCATTAGGTTACATGAAGGGCTCACGAAG
                   | ||| ||||  || |  ||||   ||  ||   |  | ||  ||||     |||| |      |||| | |  |   |  | |||| | | |||||||||||||||| | ||||||||||||||  | ||||||||  | ||  |||| || || |||||  |
gtaactcgtatgctgtctgcattggagctgctattgattttgtctttaaaaactt-ccttcaatttttcaaaaatcttcatccaacagttttttacttaatacttgacatctagGCTTGAGAATACATTGAACTATGGCCTTGAGAGGGTTTGGGCTATTGGACACATTAAAGGTTCACGCCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcatttcatggaaatttggtagtaacattgtgattggtgctcttgtcttttagGCTTGAGAATACACTTAACTATGGCCTTGAACGAGTTTGGGCATTAGGTTACATGAAGGGCTCACGAAG
                     tagtaac  putative branch site (score: 1)
                                       tgctcttgtctttt  putative PPT
             aaattt  TA-rich tract