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gtagccatcgtgcagaagtgctattcgggttttctttattttcaaaatcgatagtaatggtaattttgaactcagcacagtcttgctttgtggaggacccttcctttttcttggccccaagtgattgtaagttgctttcgtcactgtttttgcagcaactaattaatgttgtgcgcagGATCCTCTTCGGGGCGGCAGAGATAAAATGCTGGAAGAGATCGCCCGTGTGATACACAGTGAGGATCCAGACGCTGCTGCCCAGCACCTCGTCGTTGTGC
species | Zea mays |
transcript | GRMZM2G439203_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CAGATCTATTTCTGTACGAAGGGAAGACGCATACTGATTTGTTCCTTCAG GATCCTCTTCGGGGCGGCAGAGATAAAATGCTGGAAGAGATCGCTCGTGTGEST: gi|67019905|gb|CO448654.1|CO448654
genomic: CAGATCTATTTCTGTACGAAGGGAAGACGCATACTGATTTGTTCCTTCAGgtagccatcg ... ttgtgcgcagGATCCTCTTCGGGGCGGCAGAGATAAAATGCTGGAAGAGATCGCCCGTGTG
EST: CAGATCTATTTCTGTACGAAGGGAAGACGCATACTGATTTGTTCCTTCAG GATCCTCTTCGGGGCGGCAGAGATAAAATGCTGGAAGAGATCGCCCGTGTGEST: gi|78022873|gb|DV491260.1|DV491260
genomic: CAGATCTATTTCTGTACGAAGGGAAGACGCATACTGATTTGTTCCTTCAGgtagccatcg ... ttgtgcgcagGATCCTCTTCGGGGCGGCAGAGATAAAATGCTGGAAGAGATCGCCCGTGTG
EST: CAGATCTATTTCTGTACGAAGGGAAGACGCATACTGATTTGTTCCTTCAG GATCCTCTTCGGGGCGGCAGAGATAAAATGCTGGAAGAGATCGCCCGTGTGEST: gi|60396475|gb|DN229344.1|DN229344
genomic: CAGATCTATTTCTGTACGAAGGGAAGACGCATACTGATTTGTTCCTTCAGgtagccatcg ... ttgtgcgcagGATCCTCTTCGGGGCGGCAGAGATAAAATGCTGGAAGAGATCGCCCGTGTG
EST: CAGATCTATTTCTGTACGAAGGGAAGACGCATACTGATTTGTTCCTTCAG GATCCTCTTCGGGGCGGCAGAGATAAAATGCTGGAAGAGATCGCCCGTGTGEST: gi|211099041|gb|FL459781.1|FL459781
genomic: CAGATCTATTTCTGTACGAAGGGAAGACGCATACTGATTTGTTCCTTCAGgtagccatcg ... ttgtgcgcagGATCCTCTTCGGGGCGGCAGAGATAAAATGCTGGAAGAGATCGCCCGTGTG
EST: CAGATCTATTTCTGTACGAAGGGAAGACGCATACTGATTTGTTCCTTCAG GATCCTCTTCGGGGCGGCAGAGATAAAATGCTGGAAGAGATCGCCCGTGTGEST: gi|211451008|gb|FL447163.1|FL447163
genomic: CAGATCTATTTCTGTACGAAGGGAAGACGCATACTGATTTGTTCCTTCAGgtagccatcg ... ttgtgcgcagGATCCTCTTCGGGGCGGCAGAGATAAAATGCTGGAAGAGATCGCCCGTGTG
EST: CAGATCTATTTCTGTACGAAGGGAAGACGCATACTGATTTGTTCCTTCAG GATCCTCTTCGGGGCGGCAGAGATAAAATGCTGGAAGAGATCGCCCGTGTG
genomic: CAGATCTATTTCTGTACGAAGGGAAGACGCATACTGATTTGTTCCTTCAGgtagccatcg ... ttgtgcgcagGATCCTCTTCGGGGCGGCAGAGATAAAATGCTGGAAGAGATCGCCCGTGTG
attgtaagttgctttcgtcactgtttttgcagcaactaattaatgttgtgcgcagGATCCTCTTCGGGGCGGCAGAGATAAAATGCTGGAAGAGATCGCCCGTGTGATACACAGTGAGGATCCAGACGCTGCTGCCCAGCACCTCGTCGTTGTGC
aactaattaatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagccatcgtgcagaagtgctattcgggttttctttattttcaaaatcgatagtaatggtaattttgaactcagcacagtcttgctttgtggaggacccttcctttttcttggccccaagtgattgtaagttgctttcgtcactgtttttgcagcaactaattaatgttgtgcgcagGATCCTCTTCGGGGCGGCAGAGATAAAATGCTGGAAGAGATCGCCCGTGTGATACACAGTGAGGATCCAGACGCTGCTGCCCAGCACCTCGTCGTTGTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC