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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaacgctttcttgcgcccatgattgttcttctctttcacgttccgtcgtcagacgttcaaaactgaaaaaaagagatgctcctgcgaacgacagGGAATCGGCATCCTCCTTGACGGGCTCTTTGGAACGGGGACTGGCTCCACTGTCTCAGT

Basic information

species Zea mays
transcript GRMZM2G437859_T02
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G437859_T02 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os01g55500.1 (Oryza sativa), 3'ss of exon 9
gtgaacgctttcttgcgcccatgattgttcttctctttcacgttccgtcgtcagacgttcaaaactgaaaaaaaga-gatgctcctgcgaacgacagGGAATCGGCATCCTCCTTGACGGGCTCTTTGGAACGGGGACTGGCTCCACTGTCTCAGT
||| |   ||   |   || ||  ||  |||| | ||| ||        ||     ||||| | ||| ||  |||  ||| ||||    ||| ||||||||| || ||||| ||||| ||||| ||||||||||| ||||||||||| || |||||
gtggatatttaagtcatcctattgtt--tcttgttttttactcctgaatgtt----gttcagagctgtaattaagttgatactcc-ataaacaacagGGAATTGGTATCCTTCTTGATGGGCTATTTGGAACGGGTACTGGCTCCACCGTGTCAGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74240436|gb|DT648350.1|DT648350
EST:     GTGCGACTCCACCTCCGGCTCACATCCTCAGCAGAGGCATTGGGTGGCAG                         GGAATCGGCATCCTCCTTGACGGGCTCTTTGGAACGGGGACTGGCTCCACT
genomic: GTGCGACTCCACCTCCGGCTCACATCCTCAGCAGAGGCATTGGGTGGCAGgtgaacgctt ... cgaacgacagGGAATCGGCATCCTCCTTGACGGGCTCTTTGGAACGGGGACTGGCTCCACT
EST: gi|5055765|gb|AI734652.1|AI734652
EST:     GTGCGACTCCACCTCCGGCTCACATCCTCAGCAGAGGCATTGGGTGGCAG                         GGAATCGGCAT
genomic: GTGCGACTCCACCTCCGGCTCACATCCTCAGCAGAGGCATTGGGTGGCAGgtgaacgctt ... cgaacgacagGGAATCGGCAT
EST: gi|71431025|gb|DR812075.1|DR812075
EST:     GTGCGACTCCACCTCCGGCTCACATCCTCAGCAGAGGCATTGGGTGGCAG                         GGAATCGGCATCCTCCTTGACAGGCTCTTTGGAACGGGGACTGGCTCCACT
genomic: GTGCGACTCCACCTCCGGCTCACATCCTCAGCAGAGGCATTGGGTGGCAGgtgaacgctt ... cgaacgacagGGAATCGGCATCCTCCTTGACGGGCTCTTTGGAACGGGGACTGGCTCCACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttccgtcgtcagacgttcaaaactgaaaaaaagagatgctcctgcgaacgacagGGAATCGGCATCCTCCTTGACGGGCTCTTTGGAACGGGGACTGGCTCCACTGTCTCAGT
                                       ctcctgc  CT-rich tract
                   aaaactgaaaaaaa  TA-rich tract