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ctacattttaagatgctatgtcaatcaatgtcgagcagcagcggagggagtagggtagggatcttacTTTAAGGTTGCCTGCAACGTTGAACGTCACTGCTGTTGTTGAATGGATGACGTAGAAGATGGAGAAGTTAAGGCAGAACGCAAGCACCCCCGAACCTAGG
species | Zea mays |
transcript | GRMZM2G428386_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GAGATTGGATTCCGGAAGATCGACCACGACACTAACACTGCCACCGCGAC TTTAAGGTTGCCTGCAACGTTGAACGTCACTGCTGTTGTTGAATGGATGACEST: gi|149099463|gb|EE185503.2|EE185503
genomic: GAGATTGGATTCCGGAAGATCGACCACGACACTAACACTGCCACCGCGACctacatttta ... gggatcttacTTTAAGGTTGCCTGCAACGTTGAACGTCACTGCTGTTGTTGAATGGATGAC
EST: GAGATTGGATTCCGGAAGATCGACCACGACACTAACACTGCCACCGCGAC TTTAAGGTTGCCTGCAACGTTGAACGTCACTGCTGTTGTTGAATGGATGACEST: gi|13150102|gb|BG320424.1|BG320424
genomic: GAGATTGGATTCCGGAAGATCGACCACGACACTAACACTGCCACCGCGACctacatttta ... gggatcttacTTTAAGGTTGCCTGCAACGTTGAACGTCACTGCTGTTGTTGAATGGATGAC
EST: GAGATTGGATTCCGGAAGATCGACCACGACACTAACACTGCCACCGCGAC TTTAAGGTTGCCTGCAACGTTGAACGTCACTGCTGTTGTTGAATGGATGACEST: gi|94475269|gb|EB704227.1|EB704227
genomic: GAGATTGGATTCCGGAAGATCGACCACGACACTAACACTGCCACCGCGACctacatttta ... gggatcttacTTTAAGGTTGCCTGCAACGTTGAACGTCACTGCTGTTGTTGAATGGATGAC
EST: GAGATTGGATTCCGGAAGATCGACCACGACACTAACACTGCCACCGCGAC TTTAAGGTTGCCTGCAACGTTGAACGTCACTGCTGTTGTTGAATGGATGACEST: gi|211388388|gb|FL435741.1|FL435741
genomic: GAGATTGGATTCCGGAAGATCGACCACGACACTAACACTGCCACCGCGACctacatttta ... gggatcttacTTTAAGGTTGCCTGCAACGTTGAACGTCACTGCTGTTGTTGAATGGATGAC
EST: GAGATTGGATTCCGGAAGATCGACCACGACACTAACACTGCCACCGCGAC TTTAAGGTTGCCTGCAACGTTGAACGTCACTGCTGTTGTTGAATGGATGACEST: gi|60351334|gb|DN218307.1|DN218307
genomic: GAGATTGGATTCCGGAAGATCGACCACGACACTAACACTGCCACCGCGACctacatttta ... gggatcttacTTTAAGGTTGCCTGCAACGTTGAACGTCACTGCTGTTGTTGAATGGATGAC
EST: GAGATTGGATTCCGGAAGATCGACCACGACACTAACACTGCCACCGCGAC TTTAAGGTTGCCTGCAACGTTGAACGTCACTGCTGTTGTTGAATGGATGACEST: gi|78125674|gb|DV544058.1|DV544058
genomic: GAGATTGGATTCCGGAAGATCGACCACGACACTAACACTGCCACCGCGACctacatttta ... gggatcttacTTTAAGGTTGCCTGCAACGTTGAACGTCACTGCTGTTGTTGAATGGATGAC
EST: GAGATTGGATTCCGGAAGATCGACCACGACACTAACACTGCCACCGCGAC TTTAAGGTTGCCTGCAACGTTGAACGTCACTGCTGTTGTTGAATGGATGACEST: gi|76016592|gb|DT943762.1|DT943762
genomic: GAGATTGGATTCCGGAAGATCGACCACGACACTAACACTGCCACCGCGACctacatttta ... gggatcttacTTTAAGGTTGCCTGCAACGTTGAACGTCACTGCTGTTGTTGAATGGATGAC
EST: GAGATTGGATTCCGGAAGATCGACCACGACACTAACACTGCCACCGCGAC TTTAAGGTTGCCTGCAACGTTGAACGTCACTGCTGTTGTTGAATGGATGAC
genomic: GAGATTGGATTCCGGAAGATCGACCACGACACTAACACTGCCACCGCGACctacatttta ... gggatcttacTTTAAGGTTGCCTGCAACGTTGAACGTCACTGCTGTTGTTGAATGGATGAC
atgctatgtcaatcaatgtcgagcagcagcggagggagtagggtagggatcttacTTTAAGGTTGCCTGCAACGTTGAACGTCACTGCTGTTGTTGAATGGATGACGTAGAAGATGGAGAAGTTAAGGCAGAACGCAAGCACCCCCGAACCTAGG
aatcaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctacattttaagatgctatgtcaatcaatgtcgagcagcagcggagggagtagggtagggatcttacTTTAAGGTTGCCTGCAACGTTGAACGTCACTGCTGTTGTTGAATGGATGACGTAGAAGATGGAGAAGTTAAGGCAGAACGCAAGCACCCCCGAACCTAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT