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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgctccttaactgatgtacatgtagttaaggcttttatgtgattcctgaatcttaacacttgcacttgttcagAACATTATAAGTGGGCCTTGGACAACCTATTCATTAAACATAATTTTGCTCGAGTGATCATTCTAGAAG

Basic information

species Zea mays
transcript GRMZM2G426275_T01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G426275_T01 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os02g58590.1 (Oryza sativa), 3'ss of exon 9
gtaagtg---ctccttaactgatgtacatgtagttaaggcttttatgtgattcctga-----atcttaacacttgcacttgttcagAACATTATAAGTGGGCCTTGGACAACCTATTCATTAAACATAATTTTGCTCGAGTGATCATTCTAGAAG
||| |||   |||||| | |||||||     | | |||    | |||  |   ||||      || | | |  |    |  |||||||||||| || |||||||||||  | |||||||| ||||| || ||||| ||||| || ||||| ||||
gtaggtggtcctccttgattgatgtatgctgattgaagatagtgatgataccactgatccttgtcctgataactttcttatttcagAACATTACAAATGGGCCTTGGATGAGCTATTCATCAAACACAACTTTGCGCGAGTAATAATTCTGGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76285204|gb|DV024772.1|DV024772
EST:     TGTGCAAACTGAAAGGCCAGGAGAATTGACAGCATATTACAAGATTGCTA                         AACATTATAAGTGGGCCTTGGACAACCTATTCATTAAACATAATTTTGCTC
genomic: TGTGCAAACTGAAAGGCCAGGAGAATTGACAGCATATTACAAGATTGCTAgtaagtgctc ... acttgttcagAACATTATAAGTGGGCCTTGGACAACCTATTCATTAAACATAATTTTGCTC
EST: gi|71439957|gb|DR821007.1|DR821007
EST:     TGTGCAAACTGAAAGGCCAGGAGAATTGACAGCATATTACAAGATTGCTA                         AACATTATAAGTGGGCCTTGGACAACCTATTCATTAAACATAATTTTGCTC
genomic: TGTGCAAACTGAAAGGCCAGGAGAATTGACAGCATATTACAAGATTGCTAgtaagtgctc ... acttgttcagAACATTATAAGTGGGCCTTGGACAACCTATTCATTAAACATAATTTTGCTC
EST: gi|148986617|gb|EE030388.2|EE030388
EST:     TGTGCAAACTGAAAGGCCAGGAGAATTGACAGCATATTACAAGATTGCTA                         AACATTATAAGTGGGCCTTGGACAACCTATTCATTAAACATAATTTTGCTC
genomic: TGTGCAAACTGAAAGGCCAGGAGAATTGACAGCATATTACAAGATTGCTAgtaagtgctc ... acttgttcagAACATTATAAGTGGGCCTTGGACAACCTATTCATTAAACATAATTTTGCTC
EST: gi|74244431|gb|DT652345.1|DT652345
EST:     TGTGCAAACTGAAAGGCCAGGAGAATTGACAGCATATTACAAGATTGCTA                         AACATTATAAGTGGGCCTTGGACAACCTATTCATTAAACATAATTTTGCTC
genomic: TGTGCAAACTGAAAGGCCAGGAGAATTGACAGCATATTACAAGATTGCTAgtaagtgctc ... acttgttcagAACATTATAAGTGGGCCTTGGACAACCTATTCATTAAACATAATTTTGCTC
EST: gi|149082839|gb|EE172063.2|EE172063
EST:     TGTGCAAACTGAAAGGCCAGGAGAATTGACAGCATATTACAAGATTGCTA                         AACATTATAAGTGGGCCTTGGACAACCTATTCATTAAACATAATTTTGCTC
genomic: TGTGCAAACTGAAAGGCCAGGAGAATTGACAGCATATTACAAGATTGCTAgtaagtgctc ... acttgttcagAACATTATAAGTGGGCCTTGGACAACCTATTCATTAAACATAATTTTGCTC
EST: gi|211529739|gb|FL258565.1|FL258565
EST:     GTGCAAACTGAAAGGGCCAG-AGAATTGACAGCATATTACAAGATTGCTA                         AACATTATAAGTGGGCCTTGGACAACCTATTCATTAAACATAATTTTGCTC
genomic: GTGCAAACTGAAAGG-CCAGGAGAATTGACAGCATATTACAAGATTGCTAgtaagtgctc ... acttgttcagAACATTATAAGTGGGCCTTGGACAACCTATTCATTAAACATAATTTTGCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgtagttaaggcttttatgtgattcctgaatcttaacacttgcacttgttcagAACATTATAAGTGGGCCTTGGACAACCTATTCATTAAACATAATTTTGCTCGAGTGATCATTCTAGAAG
                                tcttaac  putative branch site (score: 2)
                                              cttgttc  putative PPT
              ttttatgt  TA-rich tract