1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ggaggcaattccttggtcaacaatgcgcatgacggatttaactttaccatcagtcctcagtgagatggatttaactttacttctatttcatgttatgcagTCTTTGGAACTTTGGGACATAAGGGAGAAGAACACCATGACCTTCAACAATGCGCATGACGGTTTGGTTGCAGCCCTGGCATCATCCAGTGCTACAGGGA
species | Zea mays |
transcript | GRMZM2G425377_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GTGTTTTCCACCCAACTTATCAGTCATTGCTAGTGATTGGTTGTTACGAG TCTTTGGAACTTTGGGACATAAGGGAGAAGAACACCATGACCTTCAACAATEST: gi|78115254|gb|DV533642.1|DV533642
genomic: GTGTTTTCCACCCAACTTATCAGTCATTGCTAGTGATTGGTTGTTACGAGgtaagttccc ... tgttatgcagTCTTTGGAACTTTGGGACATAAGGGAGAAGAACACCATGACCTTCAACAAT
EST: GTGTTTTCCACCCAACTTATCAGTCATTGCTAGTGATTGGTTGTTACGAG TCTTTGGAACTTTGGGACATAAGGGAGAAGAACACCATGACCTTCAACAATEST: gi|37398903|gb|CF636771.1|CF636771
genomic: GTGTTTTCCACCCAACTTATCAGTCATTGCTAGTGATTGGTTGTTACGAGgtaagttccc ... tgttatgcagTCTTTGGAACTTTGGGACATAAGGGAGAAGAACACCATGACCTTCAACAAT
EST: TTTCCACCCAACTTATCAGTCATTGCTAGTGATTGGTTGTTACGAG TCTTTGGAACTTTGGGACATAAGGGAGAAGAACACCATGACCTTCAACAATEST: gi|95107721|gb|EB739950.1|EB739950
genomic: TTTCCACCCAACTTATCAGTCATTGCTAGTGATTGGTTGTTACGAGgtaagttccc ... tgttatgcagTCTTTGGAACTTTGGGACATAAGGGAGAAGAACACCATGACCTTCAACAAT
EST: GTGTTTTCCACCCAACTTATCAGTCATTGCTAGTGATTGGTTGTTACGAG TCTTTGGAACTTTGGGACATAAGGGAGAAGAACACCATGACCTTCAACAATEST: gi|5607689|gb|AI901356.1|AI901356
genomic: GTGTTTTCCACCCAACTTATCAGTCATTGCTAGTGATTGGTTGTTACGAGgtaagttccc ... tgttatgcagTCTTTGGAACTTTGGGACATAAGGGAGAAGAACACCATGACCTTCAACAAT
EST: GTGTTTTCCACCCAACTTATCAGTCATTGCTAGTGATTGGTTGTTACGAG TCTTTGGAACTTTGGGACATAAGGGAGAAGAACACCATGACCTTCAACAATEST: gi|37392475|gb|CF633489.1|CF633489
genomic: GTGTTTTCCACCCAACTTATCAGTCATTGCTAGTGATTGGTTGTTACGAGgtaagttccc ... tgttatgcagTCTTTGGAACTTTGGGACATAAGGGAGAAGAACACCATGACCTTCAACAAT
EST: GTGTTTTCCACCCAACTTATCAGTCATTGCTAGTGATTGGTTGTTACGAG TCTTTGGAACTTTGGGACATAAGGGAGAAGAACACCATGACCTTCAACAATEST: gi|32931898|gb|CF036710.1|CF036710
genomic: GTGTTTTCCACCCAACTTATCAGTCATTGCTAGTGATTGGTTGTTACGAGgtaagttccc ... tgttatgcagTCTTTGGAACTTTGGGACATAAGGGAGAAGAACACCATGACCTTCAACAAT
EST: GTGTTTTCCGCCCAACTTATCAGTCATTGCTAGTGATTGGTTGTTACGAG TCTTTGGAACTTTGGGACATAAGGGAGAAGAACACCATGACCTTCAACAATEST: gi|5860417|gb|AW011639.1|AW011639
genomic: GTGTTTTCCACCCAACTTATCAGTCATTGCTAGTGATTGGTTGTTACGAGgtaagttccc ... tgttatgcagTCTTTGGAACTTTGGGACATAAGGGAGAAGAACACCATGACCTTCAACAAT
EST: GTGTTTTCCACCCAACTTATCAGTCATTGCTAGTGATTGGTTGTTACGAG TCTTTGGAACTTTGGGACATAAGGGAGAAGAACACCATGACCTTCAACAATEST: gi|78115253|gb|DV533641.1|DV533641
genomic: GTGTTTTCCACCCAACTTATCAGTCATTGCTAGTGATTGGTTGTTACGAGgtaagttccc ... tgttatgcagTCTTTGGAACTTTGGGACATAAGGGAGAAGAACACCATGACCTTCAACAAT
EST: GTGTTTTCCACCCAACTTATCAGTCATTGCTAGTGATTGGTTGTTACGAG TCTTTGGAACTTTGGGACATAAGGGAGAAGAACACCATGACCTTCAACAATEST: gi|60400574|gb|DN233381.1|DN233381
genomic: GTGTTTTCCACCCAACTTATCAGTCATTGCTAGTGATTGGTTGTTACGAGgtaagttccc ... tgttatgcagTCTTTGGAACTTTGGGACATAAGGGAGAAGAACACCATGACCTTCAACAAT
EST: GTGTTTTCCACCCAACTTATCAGTCATTGCTAGTGATTGGTTGTTACGAG TCTTTGGAACTTTGGGACATAAGGGAGAAGAACACCATGACCTTCAACAATEST: gi|6742462|gb|AW313277.1|AW313277
genomic: GTGTTTTCCACCCAACTTATCAGTCATTGCTAGTGATTGGTTGTTACGAGgtaagttccc ... tgttatgcagTCTTTGGAACTTTGGGACATAAGGGAGAAGAACACCATGACCTTCAACAAT
EST: GTGTTTTCCACCCAACTTATCAGTCATTGCTAGTGATTGGTTGTTACGAG TCTTTGGAACTTTGGGACATAAGGGAGAAGAACACCATGACCTTCAACAATEST: gi|60344594|gb|DN211567.1|DN211567
genomic: GTGTTTTCCACCCAACTTATCAGTCATTGCTAGTGATTGGTTGTTACGAGgtaagttccc ... tgttatgcagTCTTTGGAACTTTGGGACATAAGGGAGAAGAACACCATGACCTTCAACAAT
EST: GTGTTTTCCACCCAACTTATCAGTCATTGCTAGTGATTGGTTGTTACGAG TCTTTGGAACTTTGGGACATAAGGGAGAAGAACACCATGACCTTCAACAATEST: gi|37393934|gb|CF634234.1|CF634234
genomic: GTGTTTTCCACCCAACTTATCAGTCATTGCTAGTGATTGGTTGTTACGAGgtaagttccc ... tgttatgcagTCTTTGGAACTTTGGGACATAAGGGAGAAGAACACCATGACCTTCAACAAT
EST: GTGTTTTCCACCCAACTTATCAGTCATTGCTAGTGATTGGTTGTTACGAG TCTTTGGAACTTTGGGACATAAGGGAGAAGAACACCATGACCTTCAACAATEST: gi|32930799|gb|CF035611.1|CF035611
genomic: GTGTTTTCCACCCAACTTATCAGTCATTGCTAGTGATTGGTTGTTACGAGgtaagttccc ... tgttatgcagTCTTTGGAACTTTGGGACATAAGGGAGAAGAACACCATGACCTTCAACAAT
EST: GTGTTTTCCACCCAACTTATCAGTCATTGCTAGTGATTGGTTGTTACGAG TCTTTGGAACTTTGGGACATAAGGGAGAAGAACACCATGACCTTCAACAAT
genomic: GTGTTTTCCACCCAACTTATCAGTCATTGCTAGTGATTGGTTGTTACGAGgtaagttccc ... tgttatgcagTCTTTGGAACTTTGGGACATAAGGGAGAAGAACACCATGACCTTCAACAAT
accatcagtcctcagtgagatggatttaactttacttctatttcatgttatgcagTCTTTGGAACTTTGGGACATAAGGGAGAAGAACACCATGACCTTCAACAATGCGCATGACGGTTTGGTTGCAGCCCTGGCATCATCCAGTGCTACAGGGA
atttaac putative branch site (score: 200)
atttaactttactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggaggcaattccttggtcaacaatgcgcatgacggatttaactttaccatcagtcctcagtgagatggatttaactttacttctatttcatgttatgcagTCTTTGGAACTTTGGGACATAAGGGAGAAGAACACCATGACCTTCAACAATGCGCATGACGGTTTGGTTGCAGCCCTGGCATCATCCAGTGCTACAGGGA
- - - - - - - - -caacaat
- - - - - - - - - - - - gcgcatg