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gtataatagtcattctcatccttctttggccgagaccagtagtagctgtgttaatgagctggaatattcaccttttagatgtgctaaaagaatcacaatttcagGGTCATTGGCCTTTTCCGTCAGATCATATTATGGAG
species | Zea mays |
transcript | GRMZM2G422938_T02 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ACATTTATTGAAAATCATGACACTGGGTCCACTCAG GGTCATTGGCCTTNTCCGTCAGATCATATTATGGAGEST: gi|213188366|gb|FM182148.1|FM182148
genomic: ACATTTATTGAAAATCATGACACTGGGTCCACTCAGgtataatagt ... acaatttcagGGTCATTGGCCTTTTCCGTCAGATCATATTATGGAG
EST: GATCAGTTACATTTATTGAAAATCATGACACTGGGTCCACTCAG GGTCATTGGCCTTTTCCGTCAGATCATATTATGGAGEST: gi|50327383|gb|CO522509.1|CO522509
genomic: GATCAGTTACATTTATTGAAAATCATGACACTGGGTCCACTCAGgtataatagt ... acaatttcagGGTCATTGGCCTTTTCCGTCAGATCATATTATGGAG
EST: TGGGTCCACTCAG GGTCATTGGCCTTTTCCGTCAGATCATATTATGGAGEST: gi|31612367|gb|CD568989.1|CD568989
genomic: TGGGTCCACTCAGgtataatagt ... acaatttcagGGTCATTGGCCTTTTCCGTCAGATCATATTATGGAG
EST: CTTCAAGATCAGTTACATTTATTGAAAATCATGACACTGGGTCCACTCAG GGTCATTGGCCTTTTCCGTCAGATCATATTATGGAGEST: gi|78022116|gb|DV490503.1|DV490503
genomic: CTTCAAGATCAGTTACATTTATTGAAAATCATGACACTGGGTCCACTCAGgtataatagt ... acaatttcagGGTCATTGGCCTTTTCCGTCAGATCATATTATGGAG
EST: CTTCAAGATCAGTTACATTTATTGAAAATCATGACACTGGGTCCACTCAG GGTCATTGGCCTTTTCCGTCAGATCATATTATGGAGEST: gi|31405731|gb|CD484463.1|CD484463
genomic: CTTCAAGATCAGTTACATTTATTGAAAATCATGACACTGGGTCCACTCAGgtataatagt ... acaatttcagGGTCATTGGCCTTTTCCGTCAGATCATATTATGGAG
EST: TCAAGATCAGTTACATTTATTGAAAATCATGACGCTGGGTCCACTCAG GGTCATTGGCCTTTTCCGTCAGATCATATTATGGAGEST: gi|50331880|gb|CO527006.1|CO527006
genomic: TCAAGATCAGTTACATTTATTGAAAATCATGACACTGGGTCCACTCAGgtataatagt ... acaatttcagGGTCATTGGCCTTTTCCGTCAGATCATATTATGGAG
EST: CTTCAAGATCAGTTACATTTATTGAAAATCATGACACTGGGTCCACTCAG GGTCATTGGCCTTTTCCGTCAGATCATATTATGGAGEST: gi|50327384|gb|CO522510.1|CO522510
genomic: CTTCAAGATCAGTTACATTTATTGAAAATCATGACACTGGGTCCACTCAGgtataatagt ... acaatttcagGGTCATTGGCCTTTTCCGTCAGATCATATTATGGAG
EST: CTTCAAGATCAGTTACATTTATTGAAAATCATGACACTGGGTCCACTCAG GGTCATTGGCCTTTTEST: gi|45568059|gb|CK985881.1|CK985881
genomic: CTTCAAGATCAGTTACATTTATTGAAAATCATGACACTGGGTCCACTCAGgtataatagt ... acaatttcagGGTCATTGGCCTTTT
EST: TTTCAAGATCAGTTACATTTATTGAAAATCATGACACTGGGTCCACTCAG GGTCATTGGCCTTTTCCGTCAGATCATATTATGGAGEST: gi|148947021|gb|EC892318.2|EC892318
genomic: CTTCAAGATCAGTTACATTTATTGAAAATCATGACACTGGGTCCACTCAGgtataatagt ... acaatttcagGGTCATTGGCCTTTTCCGTCAGATCATATTATGGAG
EST: TTCAAGATCAGTTACATTTATTGAAAATCATGACACTGGGGTCCACTCAG GGTCATTGGCCTTTTCCGTCAGATCATATTATGGAGEST: gi|37394414|gb|CF634481.1|CF634481
genomic: TTCAAGATCAGTTACATTTATTGAAAATCATGACACT-GGGTCCACTCAGgtataatagt ... acaatttcagGGTCATTGGCCTTTTCCGTCAGATCATATTATGGAG
EST: CTTCAAGATCAGTTACATTTATTGAAAATCATGACACTGGGTCCACTCAG GGTCATTGGCCTTTTCCGTCAGATCATATTATGGAGEST: gi|211325068|gb|FL358359.1|FL358359
genomic: CTTCAAGATCAGTTACATTTATTGAAAATCATGACACTGGGTCCACTCAGgtataatagt ... acaatttcagGGTCATTGGCCTTTTCCGTCAGATCATATTATGGAG
EST: TTCAAGATCAGTTACATTTATTGAAAATCATGACACTGGGTCCVSCTCAG GGTCATTGGCCTTTTCCGTCAGATCATATTATGGAG
genomic: TTCAAGATCAGTTACATTTATTGAAAATCATGACACTGGGTCC-ACTCAGgtataatagt ... acaatttcagGGTCATTGGCCTTTTCCGTCAGATCATATTATGGAG
gttaatgagctggaatattcaccttttagatgtgctaaaagaatcacaatttcagGGTCATTGGCCTTTTCCGTCAGATCATATTATGGAG
tgctaaa putative branch site (score: 2)
taaaagaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataatagtcattctcatccttctttggccgagaccagtagtagctgtgttaatgagctggaatattcaccttttagatgtgctaaaagaatcacaatttcagGGTCATTGGCCTTTTCCGTCAGATCATATTATGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA