1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...atgtagagatgctgaatgcgtctctgcaagcaattaatgaatgctttccaaaataacttctggtgtgagtatacttgctgaccgtcttttctttctccagTACTATACGGCAACAGTTGATCAATACTGAGGATATACGGCGCATTCGTAAAAAGGCTCCATGCACTCGTTCCGAAATATGGATGATTGAGAAAGGTTCA
species | Zea mays |
transcript | GRMZM2G421829_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ACACTCAAGAGAAAAGTGCAGATAGATGATGCCATGGTTCTGCATGCTGA TACTATACGGCAACAGNTGATCAATACTGAGGATATACGGCGCATTCGTAAEST: gi|211417735|gb|FL244164.1|FL244164
genomic: ACACTCAAGAGAAAAGTGCAGATAGATGATGCCATGGTCCTGCATGCTGAgtatgtattt ... ctttctccagTACTATACGGCAACAGTTGATCAATACTGAGGATATACGGCGCATTCGTAA
EST: ACACTCAAGAGAAAAGTGCAGATAGATGATGCCATGGTTCTGCATGCTGA TACTATACGGCAACAGTTGATCAATACTGAGGATATACGGCGCATTCGTAA
genomic: ACACTCAAGAGAAAAGTGCAGATAGATGATGCCATGGTCCTGCATGCTGAgtatgtattt ... ctttctccagTACTATACGGCAACAGTTGATCAATACTGAGGATATACGGCGCATTCGTAA
ttccaaaataacttctggtgtgagtatacttgctgaccgtcttttctttctccagTACTATACGGCAACAGTTGATCAATACTGAGGATATACGGCGCATTCGTAAAAAGGCTCCATGCACTCGTTCCGAAATATGGATGATTGAGAAAGGTTCA
tgctgac putative branch site (score: 156)
ctgaccgtcttttctt CT-rich tract
aaataactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtagagatgctgaatgcgtctctgcaagcaattaatgaatgctttccaaaataacttctggtgtgagtatacttgctgaccgtcttttctttctccagTACTATACGGCAACAGTTGATCAATACTGAGGATATACGGCGCATTCGTAAAAAGGCTCCATGCACTCGTTCCGAAATATGGATGATTGAGAAAGGTTCA
- - - -gatgctg
- - - - - - tgaatgc
- - - - - - - - - - - - tgcaagc
- - - - - - - - - - - - - - - - - - - - - - - - -aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - cttctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttgctg