1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...catggatcctgcaattatgagattttctgttatttgaatctaattaccacatatcttttcactgatctgatagaggattatgttgttttatttattacagGCTCTGGAACTTTTCAAGAAAAAAGAAGTAGATTTTTTGATTGCAACTGATGTCGCTGCTCGT
species | Zea mays |
transcript | GRMZM2G420865_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGAAAGCAGCTGAACTTCATGGCAACCTTACACAGGCCCAGCGGCTTGAG GCTCTGGAACTTTTCAAGAAAAAAGAAGTAGATTTTTTGATTGCAACTGATEST: gi|67031210|gb|CO459959.1|CO459959
genomic: TGAAAGCAGCTGAACTTCATGGCAACCTTACACAGGCCCAGCGGCTTGAGgtgatcttat ... tttattacagGCTCTGGAACTTTTCAAGAAAAAAGAAGTAGATTTTTTGATTGCAACTGAT
EST: TGAAAGCAGCTGAACTTCATGGCAACCTTACACAGGCCCAGCGGCTTGAG GCTCTGGAACTTTTCAAGAAAAAAGAAGTAGATTTTTTGATTGCAACTGATEST: gi|4887454|gb|AI677553.1|AI677553
genomic: TGAAAGCAGCTGAACTTCATGGCAACCTTACACAGGCCCAGCGGCTTGAGgtgatcttat ... tttattacagGCTCTGGAACTTTTCAAGAAAAAAGAAGTAGATTTTTTGATTGCAACTGAT
EST: AGCAGCTGAACTTCATGGCAACCTTACACAGGCCCAGCGGCTTGAG GCTCTGGAACTTTTCAAGAAAAAAGAAGTAGATTTTTTGATTGCAACTGATEST: gi|31349040|gb|CD433397.1|CD433397
genomic: AGCAGCTGAACTTCATGGCAACCTTACACAGGCCCAGCGGCTTGAGgtgatcttat ... tttattacagGCTCTGGAACTTTTCAAGAAAAAAGAAGTAGATTTTTTGATTGCAACTGAT
EST: TGAAAGCAGCTGAACTTCATGGCAACCTTACACAGGCCCAGCGGCTTGAG GCTCTGGAACTTTTCAAGAAAAAAGAAGTAGATTTTTTGATTGCAACTGATEST: gi|4887453|gb|AI677552.1|AI677552
genomic: TGAAAGCAGCTGAACTTCATGGCAACCTTACACAGGCCCAGCGGCTTGAGgtgatcttat ... tttattacagGCTCTGGAACTTTTCAAGAAAAAAGAAGTAGATTTTTTGATTGCAACTGAT
EST: TGAAAGCAGCTGAACTTCATGGCAACCTTACACAGGCCCAGCGGCTTGAG GCTCTGGAACTTTTCAAGAAAAAAGAAGTAGATTTTTTGATTGCAACTGATEST: gi|78090029|gb|DV518403.1|DV518403
genomic: TGAAAGCAGCTGAACTTCATGGCAACCTTACACAGGCCCAGCGGCTTGAGgtgatcttat ... tttattacagGCTCTGGAACTTTTCAAGAAAAAAGAAGTAGATTTTTTGATTGCAACTGAT
EST: TGAAAGCAGCTGAACTTCATGGCAACCTTACACAGGCCCAGCGGCTTGAG GCTCTGGAACTTTTCAAGAAAAAAGAAGTAGATTTTTTGATTGCAACTGAT
genomic: TGAAAGCAGCTGAACTTCATGGCAACCTTACACAGGCCCAGCGGCTTGAGgtgatcttat ... tttattacagGCTCTGGAACTTTTCAAGAAAAAAGAAGTAGATTTTTTGATTGCAACTGAT
accacatatcttttcactgatctgatagaggattatgttgttttatttattacagGCTCTGGAACTTTTCAAGAAAAAAGAAGTAGATTTTTTGATTGCAACTGATGTCGCTGCTCGT
ttttattt CT-rich tract
attatgttgttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catggatcctgcaattatgagattttctgttatttgaatctaattaccacatatcttttcactgatctgatagaggattatgttgttttatttattacagGCTCTGGAACTTTTCAAGAAAAAAGAAGTAGATTTTTTGATTGCAACTGATGTCGCTGCTCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT