Sequence
atgc intronic sequence ATGC exonic sequencegtaacatacagttcaaaaaacttgatcccttcagtacacacaggagtaaaacggctgatggccaaggtggtttttcgtggccaaaactgtgcagGTTCAGGCTTGTGGTTCACTTGTCACAGAAGAGCAGCCCCATGCGATGGTGATCCCGATGGAATACTTCCTCATGGGGTACGGGCTCTACAGGCCATCGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G413857_T01 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os01g09670.1 (Oryza sativa), 3'ss of exon 10
--------gtaacat-acagttcaaaaa---acttgatcccttcagtacacacaggagtaaaacggctgatggccaaggtggtttttcgtggccaaaactgtgcagGTTCAGGCTTGTGGTTCACTTGTCACAGAAGAGCAGCCCCATGCGATGGTGATCCCGATGGAATACTTCCTCATGGGGTACGGGCTCTACAGGCCATCGC
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gtataaagaccatatcacaatttaacagctgacatagcaaattgatgatccatacgcagagtaaggcaagttctgaatgtg-catttcgcctctaaatc---gcagGTTCAGGCATGCGGGTCACTCGTCACCGAGGAGCAACCGCACGCGATGTTGATCCCCATGGAGTACTTCCTCATGGGATATGGGCTCTACAGACCTTCCC
upper sequence: GRMZM2G413857_T01 (Zea mays), 3'ss of exon 10
lower sequence: GLYMA10G30270.1 (Glycine max), 3'ss of exon 10
-------------------------gtaacatacagttcaaaaa-acttgatcccttcagtacacacaggagtaaaacggctgatggccaaggtggtttttcgtggccaaaactgtgcagGTTCAGGCTTGTGGTTCACTTGTCACAGAAGAGCAGCCCCATGCGATGGTGATCCCGATGGAATACTTCCTCATGGGGTACGGGCTCTACAGGCCATCGC
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gtaggttgtacattcattttatgagtcaacatataacttatactcagcagcctccttaaatctagttgagaagacaaacaaaaatagc-atgatcatttt-----gtaatacttgctcagGTTCAGGCTTGTGGCTCACTAGTAACAGAAGAGCACCCAAATTCCATGATATCACCACTTGAGGGTTTCTTAATGGGTTTTGGCTACCACAGACAAACAC
upper sequence: GRMZM2G413857_T01 (Zea mays), 3'ss of exon 10
lower sequence: GLYMA10G30270.2 (Glycine max), 3'ss of exon 10
-------------------------gtaacatacagttcaaaaa-acttgatcccttcagtacacacaggagtaaaacggctgatggccaaggtggtttttcgtggccaaaactgtgcagGTTCAGGCTTGTGGTTCACTTGTCACAGAAGAGCAGCCCCATGCGATGGTGATCCCGATGGAATACTTCCTCATGGGGTACGGGCTCTACAGGCCATCGC------
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gtaggttgtacattcattttatgagtcaacatataacttatactcagcagcctccttaaatctagttgagaagacaaacaaaaatagc-atgatcatttt-----gtaatacttgctcaggttcagGCTTGTGGCTCACTAGTAACAGAAGAGCACCCAAATTCCATGATATCACCACTTGAGGGTTTCTTAATGGGTTTTGGCTACCACAGACAAACACATGCTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|67011356|gb|CO440105.1|CO440105EST: CTGTCCACATGACCACAAAGCTGGACCGGAGATACTGCGCTCTAGTCGAG GTTCAGGCTTGTGGTTCACTTGTCACAGAAGAGCAGCCCCATGCGATGGTG
genomic: CTGTCCACATGACCACAAAGCTGGACCGGAGATACTGCGCTCTAGTCGAGgtaacataca ... aactgtgcagGTTCAGGCTTGTGGTTCACTTGTCACAGAAGAGCAGCCCCATGCGATGGTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acaggagtaaaacggctgatggccaaggtggtttttcgtggccaaaactgtgcagGTTCAGGCTTGTGGTTCACTTGTCACAGAAGAGCAGCCCCATGCGATGGTGATCCCGATGGAATACTTCCTCATGGGGTACGGGCTCTACAGGCCATCGC
ggctgat putative branch site (score: 4)
agtaaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaacatacagttcaaaaaacttgatcccttcagtacacacaggagtaaaacggctgatggccaaggtggtttttcgtggccaaaactgtgcagGTTCAGGCTTGTGGTTCACTTGTCACAGAAGAGCAGCCCCATGCGATGGTGATCCCGATGGAATACTTCCTCATGGGGTACGGGCTCTACAGGCCATCGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA